Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017691 Carpinus fangiana HOM05D006239 ORTHO05D008159 6.4e-151 538.1 449 100.0
Actinidia03938 Actinidia chinensis HOM05D006239 ORTHO05D008159 1.9e-78 297.4 400 62.8
Duzib177G0431 Durio zibethinus HOM05D006239 ORTHO05D008159 1.9e-78 297.4 402 65.4
Gohir.A13G164500 Gossypium hirsutum HOM05D006239 ORTHO05D008159 3.2e-78 296.6 402 59.7
Thecc.05G244600 Theobroma cacao HOM05D006239 ORTHO05D008159 3.2e-78 296.6 402 65.9
Gohir.D13G167300 Gossypium hirsutum HOM05D006239 ORTHO05D008159 8.0e-77 292.0 402 63.7
CSS0011243 Camellia sinensis var. sinensis HOM05D006239 ORTHO05D008159 4.0e-76 289.7 383 57.4
CSS0021733 Camellia sinensis var. sinensis HOM05D006239 ORTHO05D008159 4.0e-76 289.7 383 57.4
Gorai.013G195100 Gossypium raimondii HOM05D006239 ORTHO05D008159 5.2e-76 289.3 402 63.4
Gorai.007G257200 Gossypium raimondii HOM05D006239 ORTHO05D008159 8.8e-76 288.5 377 63.7
Ciclev10019618m.g Citrus clementina HOM05D006239 ORTHO05D008159 1.5e-75 287.7 403 57.1
MD12G1008200 Malus domestica HOM05D006239 ORTHO05D008159 1.7e-74 284.3 402 63.2
MD14G1005600 Malus domestica HOM05D006239 ORTHO05D008159 4.8e-74 282.7 402 62.9
Potri.013G062000 Populus trichocarpa HOM05D006239 ORTHO05D008159 4.8e-74 282.7 401 63.1
Gorai.008G034200 Gossypium raimondii HOM05D006239 ORTHO05D008159 1.4e-73 281.2 402 61.2
Lsat_1_v5_gn_2_103561 Lactuca sativa HOM05D006239 ORTHO05D008159 2.4e-73 280.4 402 57.2
Dinv25066 Davidia involucrata HOM05D006239 ORTHO05D008159 7.0e-73 278.9 404 61.6
QL07p017897 Quercus lobata HOM05D006239 ORTHO05D008159 9.1e-73 278.5 355 48.7
Dinv25111 Davidia involucrata HOM05D006239 ORTHO05D008159 1.2e-72 278.1 404 61.6
Prupe.7G009400 Prunus persica HOM05D006239 ORTHO05D008159 1.6e-72 277.7 402 58.7
FvH4_1g28430 Fragaria vesca HOM05D006239 ORTHO05D008159 4.5e-72 276.2 403 61.8
FAN23G2085 Fragaria x ananassa HOM05D006239 ORTHO05D008159 4.5e-72 276.2 403 62.0
TAR623G1602 Trochodendron aralioides HOM05D006239 ORTHO05D008159 4.5e-72 276.2 402 60.9
Aqoxy2G00594 Aquilegia oxysepala HOM05D006239 ORTHO05D008159 5.9e-72 275.8 400 61.8
FAN28G0797 Fragaria x ananassa HOM05D006239 ORTHO05D008159 5.9e-72 275.8 403 61.8
Hma1.2p1_0768F.1_g215640 Hydrangea macrophylla HOM05D006239 ORTHO05D008159 7.7e-72 275.4 402 61.2
FAN19G2333 Fragaria x ananassa HOM05D006239 ORTHO05D008159 1.7e-71 274.2 403 61.5
FAN26G0828 Fragaria x ananassa HOM05D006239 ORTHO05D008159 1.7e-71 274.2 403 61.5
Nitab4.5_0002087g0020 Nicotiana tabacum HOM05D006239 ORTHO05D008159 1.7e-71 274.2 403 61.8
TAR371G1251 Trochodendron aralioides HOM05D006239 ORTHO05D008159 2.9e-71 273.5 402 60.2
Duzib128G1513 Durio zibethinus HOM05D006239 ORTHO05D008159 3.8e-71 273.1 403 48.9
RcHm_v2.0_Chr3g0496481 Rosa chinensis HOM05D006239 ORTHO05D008159 3.8e-71 273.1 403 62.0
TWI60G1231 Tripterygium wilfordii HOM05D006239 ORTHO05D008159 3.8e-71 273.1 400 62.8
TWI32G0882 Tripterygium wilfordii HOM05D006239 ORTHO05D008159 5.0e-71 272.7 402 61.7
Hma1.2p1_0106F.1_g051090 Hydrangea macrophylla HOM05D006239 ORTHO05D008159 6.6e-71 272.3 400 60.8
CAN.G128.146 Capsicum annuum HOM05D006239 ORTHO05D008159 3.3e-70 270.0 404 60.6
Gohir.A11G231700 Gossypium hirsutum HOM05D006239 ORTHO05D008159 3.3e-70 270.0 400 62.0
Nitab4.5_0000387g0060 Nicotiana tabacum HOM05D006239 ORTHO05D008159 5.5e-70 269.2 403 61.5
PGSC0003DMG400028126 Solanum tuberosum HOM05D006239 ORTHO05D008159 7.2e-70 268.9 405 60.0
Lj1A1064T31 Lonicera japonica HOM05D006239 ORTHO05D008159 9.5e-70 268.5 399 62.2
Sopen10g032010 Solanum pennellii HOM05D006239 ORTHO05D008159 9.5e-70 268.5 405 60.5
Dinv05570 Davidia involucrata HOM05D001400 ORTHO05D001795 2.8e-69 266.9 407 60.7
Manes.08G154600 Manihot esculenta HOM05D006239 ORTHO05D008159 1.8e-68 264.2 400 61.8
PGR142G3691 Punica granatum HOM05D006239 ORTHO05D008159 1.8e-68 264.2 405 59.8
Gohir.A08G219511 Gossypium hirsutum HOM05D006239 ORTHO05D008159 3.0e-68 263.5 402 60.7
HanXRQChr07g0197151 Helianthus annuus HOM05D006239 ORTHO05D008159 1.2e-67 261.5 401 59.9
Lj1g0013485 Lotus japonicus HOM05D006239 ORTHO05D008159 1.2e-67 261.5 413 54.0
Cpa.g.sc161.13 Carica papaya HOM05D006239 ORTHO05D008159 3.4e-67 260.0 402 59.5
Sabra13G0054800 Salix brachista HOM05D006239 ORTHO05D008159 4.4e-67 259.6 402 60.0
Solyc10g081500.1 Solanum lycopersicum HOM05D006239 ORTHO05D008159 5.7e-67 259.2 402 59.7
ECA233G3894 Erigeron canadensis HOM05D006239 ORTHO05D008159 7.5e-67 258.8 408 52.9
Atru.chr2.1466 Acer truncatum HOM05D006239 ORTHO05D008159 9.8e-67 258.5 402 60.2
Peaxi162Scf00575g00001 Petunia axillaris HOM05D006239 ORTHO05D008159 1.7e-66 257.7 402 59.5
Gohir.D08G236400 Gossypium hirsutum HOM05D006239 ORTHO05D008159 7.0e-65 252.3 416 57.7
PSO339G0050 Papaver somniferum HOM05D006239 ORTHO05D008159 7.0e-65 252.3 402 58.2
Cc06_g17210 Coffea canephora HOM05D006239 ORTHO05D008159 1.2e-64 251.5 400 59.0
HanXRQChr13g0398991 Helianthus annuus HOM05D006239 ORTHO05D008159 2.0e-64 250.8 405 51.1
Lj2g0011715 Lotus japonicus HOM05D006239 ORTHO05D008159 2.7e-64 250.4 409 46.0
MBI05_g30081_MAGBIO Magnolia biondii HOM05D006239 ORTHO05D008159 3.5e-64 250.0 402 58.5
ECA238G1206 Erigeron canadensis HOM05D006239 ORTHO05D008159 1.0e-63 248.4 403 56.6
Gorai.004G251600 Gossypium raimondii HOM05D006239 ORTHO05D008159 1.0e-63 248.4 416 57.5
HanXRQChr11g0348641 Helianthus annuus HOM05D006239 ORTHO05D008159 1.3e-63 248.1 402 58.2
Lalb_Chr22g0358871 Lupinus albus HOM05D006239 ORTHO05D008159 1.7e-63 247.7 402 57.5
Eucgr.A02127 Eucalyptus grandis HOM05D006239 ORTHO05D008159 2.9e-63 246.9 403 52.6
ECA248G1952 Erigeron canadensis HOM05D006239 ORTHO05D008159 5.0e-63 246.1 401 57.9
CANSAT78G0576 Cannabis sativa HOM05D006239 ORTHO05D008159 1.9e-62 244.2 402 58.0
Oeu043892.1 Olea europaea HOM05D006239 ORTHO05D008159 1.9e-62 244.2 404 55.4
Nitab4.5_0001606g0060 Nicotiana tabacum HOM05D006239 ORTHO05D008159 7.3e-62 242.3 402 57.5
TAR281G0001 Trochodendron aralioides HOM05D006239 ORTHO05D008159 1.2e-61 241.5 402 53.2
Gohir.D12G033400 Gossypium hirsutum HOM05D006239 ORTHO05D008159 6.1e-61 239.2 379 42.0
TPR.G29873 Trifolium pratense HOM05D006239 ORTHO05D008159 8.0e-61 238.8 411 57.9
Psat1g090680 Pisum sativum HOM05D006239 ORTHO05D008159 1.4e-60 238.0 404 58.4
PSO384G0331 Papaver somniferum HOM05D006239 ORTHO05D008159 2.3e-60 237.3 402 56.5
ClCG10G015950 Citrullus lanatus HOM05D006239 ORTHO05D008159 5.2e-60 236.1 400 57.5
DCAR_013480 Daucus carota HOM05D006239 ORTHO05D008159 5.2e-60 236.1 402 48.8
PGR042G2680 Punica granatum HOM05D006239 ORTHO05D008159 8.9e-60 235.3 405 57.0
Oeu029560.1 Olea europaea HOM05D006239 ORTHO05D008159 1.2e-59 235.0 377 58.9
Glyma.16G038200 Glycine max HOM05D006239 ORTHO05D008159 1.5e-59 234.6 403 55.6
Migut.L01867 Erythranthe guttata HOM05D006239 ORTHO05D008159 2.0e-59 234.2 399 46.9
Medtr6g027840 Medicago truncatula HOM05D006239 ORTHO05D008159 2.0e-59 234.2 404 58.2
Lalb_Chr02g0157291 Lupinus albus HOM05D006239 ORTHO05D008159 2.6e-59 233.8 402 56.7
COL.COLO4_28611 Corchorus olitorius HOM05D006239 ORTHO05D008159 3.4e-59 233.4 402 59.0
MELO3C009784.2 Cucumis melo HOM05D006239 ORTHO05D008159 4.4e-59 233.0 400 57.5
VMungo1383G2301 Vigna mungo HOM05D006239 ORTHO05D008159 4.4e-59 233.0 402 55.5
Glyma.19G114600 Glycine max HOM05D006239 ORTHO05D008159 5.8e-59 232.6 402 56.0
Glyma.05G088400 Glycine max HOM05D006239 ORTHO05D008159 1.3e-58 231.5 403 57.8
VMungo0464G1396 Vigna mungo HOM05D006239 ORTHO05D008159 8.3e-58 228.8 403 56.1
Phvul.004G051200 Phaseolus vulgaris HOM05D006239 ORTHO05D008159 1.4e-57 228.0 403 56.1
Phvul.001G113900 Phaseolus vulgaris HOM05D006239 ORTHO05D008159 2.4e-57 227.3 403 55.3
CsaV3_3G040530 Cucumis sativus L. HOM05D006239 ORTHO05D008159 3.2e-57 226.9 400 56.5
arahy.Tifrunner.gnm1.ann1.RRY6M7 Arachis hypogaea HOM05D006239 ORTHO05D008159 2.0e-56 224.2 404 55.2
Lsat_1_v5_gn_6_31780 Lactuca sativa HOM05D006239 ORTHO05D008159 3.0e-55 220.3 402 53.0
arahy.Tifrunner.gnm1.ann1.P89NTP Arachis hypogaea HOM05D006239 ORTHO05D008159 8.6e-55 218.8 404 54.7
Lsat_1_v5_gn_1_56100 Lactuca sativa HOM05D006239 ORTHO05D008159 7.3e-54 215.7 403 56.1
Aqoxy1G00540 Aquilegia oxysepala HOM05D006239 ORTHO05D008159 9.5e-54 215.3 400 54.0
DCAR_020658 Daucus carota HOM05D006239 ORTHO05D008159 9.8e-51 205.3 205 57.1
Lj2P417T8 Lonicera japonica HOM05D006239 ORTHO05D008159 4.9e-50 203.0 377 42.4
Sed0016948 Sechium edule HOM05D006239 ORTHO05D008159 1.6e-48 198.0 400 53.5
Haze_20449 Corylus avellana HOM05D006239 ORTHO05D008159 2.1e-48 197.6 284 71.5
HPP92_017662 Vanilla planifolia HOM05D006239 ORTHO05D008159 4.4e-43 179.9 408 40.4
ATR0697G234 Amborella trichopoda HOM05D006239 ORTHO05D008159 7.6e-43 179.1 396 49.0
HPP92_015661 Vanilla planifolia HOM05D006239 ORTHO05D008159 9.2e-41 172.2 406 45.1
Gohir.D13G167259 Gossypium hirsutum HOM05D006239 ORTHO05D008159 5.1e-39 166.4 278 64.7
HPP92_013951 Vanilla planifolia HOM05D006239 ORTHO05D008159 8.6e-39 165.6 406 42.9
HPP92_018638 Vanilla planifolia HOM05D006239 ORTHO05D008159 2.1e-37 161.0 406 36.0
Haze_20450 Corylus avellana HOM05D006239 ORTHO05D008159 1.2e-35 155.2 105 75.2
HPP92_012148 Vanilla planifolia HOM05D006239 ORTHO05D008159 4.9e-34 149.8 408 45.3
Os03g0655500 Oryza sativa ssp. japonica HOM05D006239 ORTHO05D008159 1.2e-32 145.2 226 39.4
Zm00001eb052760 Zea mays HOM05D006239 ORTHO05D008159 2.1e-32 144.4 224 40.2
Zm00001eb218330 Zea mays HOM05D006239 ORTHO05D008159 6.0e-32 142.9 229 39.7
Actinidia37802 Actinidia chinensis HOM05D006239 ORTHO05D008159 1.1e-30 138.7 268 37.3
Ca_25688_v3 Cicer arietinum L. HOM05D006239 ORTHO05D008159 2.6e-27 127.5 296 58.8
SEGI_06606 Sequoiadendron giganteum HOM05D006239 ORTHO05D008159 9.3e-25 119.0 200 37.0
AagrBONN_evm.TU.Sc2ySwM_117.3902 Anthoceros agrestis HOM05D006239 ORTHO05D008159 4.0e-20 103.6 400 44.8
TWI32G0101 Tripterygium wilfordii HOM05D006239 ORTHO05D008159 1.1e-17 95.5 58 77.6
TWI32G0705 Tripterygium wilfordii HOM05D006239 ORTHO05D008159 1.1e-17 95.5 58 77.6
GSVIVG01029973001 Vitis vinifera HOM05D006239 ORTHO05D008159 9.3e-17 92.4 51 84.3
AagrBONN_evm.TU.Sc2ySwM_362.193 Anthoceros agrestis HOM05D006239 ORTHO05D008159 6.0e-16 89.7 204 31.4
Mapoly0060s0009 Marchantia polymorpha HOM05D006239 ORTHO05D008159 6.0e-16 89.7 205 31.7
SEGI_12817 Sequoiadendron giganteum HOM05D007663 ORTHO05D009455 6.7e-15 86.3 158 31.0
Dinv18473 Davidia involucrata HOM05D006239 ORTHO05D008159 9.6e-14 82.4 60 68.3
Mapoly0012s0013 Marchantia polymorpha HOM05D006239 ORTHO05D009455 2.1e-13 81.3 203 28.6
HanXRQChr13g0398581 Helianthus annuus HOM05D006239 ORTHO05D008159 1.4e-12 78.6 53 62.3
SEGI_03126 Sequoiadendron giganteum HOM05D006239 ORTHO05D009388 2.9e-10 70.9 410 35.4
Pp3c10_23790 Physcomitrium patens HOM05D006239 ORTHO05D009455 6.5e-10 69.7 107 33.6
Migut.F00643 Erythranthe guttata HOM05D007663 ORTHO05D009455 5.5e-09 66.6 108 33.3
CANSAT56G3657 Cannabis sativa HOM05D007663 ORTHO05D009455 1.0e-07 62.4 110 31.8
Nitab4.5_0008256g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.8e-07 61.6 54 51.9
MSTRG.27307 Avicennia marina HOM05D007663 ORTHO05D009455 2.3e-07 61.2 124 30.6
Nitab4.5_0000409g0130 Nicotiana tabacum HOM05D007663 ORTHO05D009455 2.3e-07 61.2 125 31.2
ATR0487G010 Amborella trichopoda HOM05D007464 ORTHO05D009388 3.0e-07 60.8 54 51.9
Dinv21764 Davidia involucrata HOM05D007663 ORTHO05D009455 3.9e-07 60.5 125 28.8
Actinidia00714 Actinidia chinensis HOM05D007464 ORTHO05D009388 6.7e-07 59.7 53 49.1
Solyc09g074280.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 8.7e-07 59.3 48 54.2
Solyc09g074290.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 8.7e-07 59.3 48 54.2
Sopen09g029110 Solanum pennellii HOM05D007464 ORTHO05D009388 8.7e-07 59.3 48 54.2
Nitab4.5_0001222g0010 Nicotiana tabacum HOM05D007663 ORTHO05D009455 1.1e-06 58.9 126 30.2
CSS0001014 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 1.5e-06 58.5 182 28.6
CSS0017188 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 1.5e-06 58.5 182 28.6
Peaxi162Scf00006g00369 Petunia axillaris HOM05D007464 ORTHO05D009388 1.5e-06 58.5 44 59.1
SalBow2G2643 Salvia bowleyana HOM05D007464 ORTHO05D009388 1.5e-06 58.5 59 49.2
Sopen09g029120 Solanum pennellii HOM05D007464 ORTHO05D009388 1.5e-06 58.5 48 54.2
PGSC0003DMG400034780 Solanum tuberosum HOM05D007464 ORTHO05D009388 1.5e-06 58.5 53 50.9
PGSC0003DMG402003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 1.5e-06 58.5 53 50.9
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 1.5e-06 58.5 108 31.5
Cpa.g.sc9.143 Carica papaya HOM05D007464 ORTHO05D009388 1.9e-06 58.2 49 55.1
Nn4g26088 Nelumbo nucifera HOM05D007464 ORTHO05D009388 2.5e-06 57.8 49 55.1
PGSC0003DMG401003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 2.5e-06 57.8 48 54.2
VMungo0720G1822 Vigna mungo HOM05D007464 ORTHO05D009388 2.5e-06 57.8 50 52.0
Ca_10384_v3 Cicer arietinum L. HOM05D007464 ORTHO05D009388 3.3e-06 57.4 50 52.0
ECA247G3730 Erigeron canadensis HOM05D007464 ORTHO05D009388 3.3e-06 57.4 49 53.1
Nitab4.5_0001985g0030 Nicotiana tabacum HOM05D007464 ORTHO05D009388 3.3e-06 57.4 53 52.8
SalBow3G1672 Salvia bowleyana HOM05D007663 ORTHO05D009455 3.3e-06 57.4 124 32.3
Medtr1g089180 Medicago truncatula HOM05D007464 ORTHO05D009388 4.3e-06 57.0 58 48.3
Nitab4.5_0008984g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 4.3e-06 57.0 54 48.1
arahy.Tifrunner.gnm1.ann1.CJK2YY Arachis hypogaea HOM05D007663 ORTHO05D009455 5.7e-06 56.6 163 26.4
arahy.Tifrunner.gnm1.ann1.QDW8X7 Arachis hypogaea HOM05D007663 ORTHO05D009455 5.7e-06 56.6 163 26.4
CiPaw.07G097200 Carya illinoinensis HOM05D007464 ORTHO05D009388 5.7e-06 56.6 54 51.9
Duzib133G1000 Durio zibethinus HOM05D007464 ORTHO05D009388 5.7e-06 56.6 47 55.3
Phvul.007G167500 Phaseolus vulgaris HOM05D007464 ORTHO05D009388 5.7e-06 56.6 50 52.0
Lj1C41G0 Lonicera japonica HOM05D007464 ORTHO05D009388 7.4e-06 56.2 45 51.1


User provided reference genes

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