Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017684 Carpinus fangiana HOM05D000881 ORTHO05D000666 2.3e-72 275.4 131 100.0
Haze_20463 Corylus avellana HOM05D019023 ORTHO05D000666 1.7e-51 206.1 131 76.3
CiPaw.09G165100 Carya illinoinensis HOM05D000881 ORTHO05D000666 9.3e-18 94.0 120 40.8
TWI34G1202 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 4.6e-17 91.7 90 45.6
TWI60G0863 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 6.7e-16 87.8 95 43.2
arahy.Tifrunner.gnm1.ann1.J1HUHD Arachis hypogaea HOM05D000881 ORTHO05D000666 8.7e-16 87.4 89 40.4
arahy.Tifrunner.gnm1.ann1.Y8A2Y7 Arachis hypogaea HOM05D000881 ORTHO05D000666 8.7e-16 87.4 89 40.4
Cpa.g.sc161.5 Carica papaya HOM05D000881 ORTHO05D000666 2.5e-15 85.9 92 44.6
Manes.09G138800 Manihot esculenta HOM05D000881 ORTHO05D000666 5.7e-15 84.7 97 38.1
Lalb_Chr14g0370271 Lupinus albus HOM05D000881 ORTHO05D000666 9.6e-15 84.0 88 39.8
Ciclev10022272m.g Citrus clementina HOM05D000881 ORTHO05D000666 2.1e-14 82.8 92 43.5
Cfa017687 Carpinus fangiana HOM05D000881 ORTHO05D000666 3.7e-14 82.0 134 35.1
Potri.019G037700 Populus trichocarpa HOM05D000881 ORTHO05D000666 3.7e-14 82.0 122 35.2
QL10p034472 Quercus lobata HOM05D000881 ORTHO05D000666 3.7e-14 82.0 91 42.9
Atru.chr2.1411 Acer truncatum HOM05D000881 ORTHO05D000666 4.8e-14 81.6 92 40.2
Lj2g0006631 Lotus japonicus HOM05D000881 ORTHO05D000666 8.2e-14 80.9 139 33.1
FAN08G3596 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.1e-13 80.5 91 38.5
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 1.1e-13 80.5 88 38.6
Psat3g087960 Pisum sativum HOM05D000881 ORTHO05D000666 1.4e-13 80.1 89 43.8
FAN04G1642 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.8e-13 79.7 90 40.0
FvH4_5g18340 Fragaria vesca HOM05D000881 ORTHO05D000666 2.4e-13 79.3 89 38.2
FAN18G3122 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.4e-13 79.3 89 38.2
Ciclev10022629m.g Citrus clementina HOM05D000881 ORTHO05D000666 4.1e-13 78.6 88 39.8
Potri.013G054800 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.1e-13 78.6 89 36.0
Potri.013G054900 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.3e-13 78.2 95 36.8
RcHm_v2.0_Chr7g0177251 Rosa chinensis HOM05D000881 ORTHO05D000666 5.3e-13 78.2 89 37.1
Sabra19G0049000 Salix brachista HOM05D000881 ORTHO05D000666 5.3e-13 78.2 95 35.8
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 9.0e-13 77.4 137 32.8
Thhalv10023940m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 1.5e-12 76.6 96 41.7
QL11p032427 Quercus lobata HOM05D000881 ORTHO05D000666 1.5e-12 76.6 144 35.4
Glyma.09G165300 Glycine max HOM05D000881 ORTHO05D000666 2.6e-12 75.9 89 37.1
Lj1g0015574 Lotus japonicus HOM05D000881 ORTHO05D000666 2.6e-12 75.9 92 41.3
Oeu044647.1 Olea europaea HOM05D000881 ORTHO05D000666 2.6e-12 75.9 92 39.1
SGA_v2.0_scaffold41G15791 Striga asiatica HOM05D000881 ORTHO05D000666 2.6e-12 75.9 91 38.5
Aa31LG2G1880 Aethionema arabicum HOM05D000881 ORTHO05D000666 3.4e-12 75.5 92 41.3
THA.LOC104805773 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 3.4e-12 75.5 92 42.4
BcaC06g31769 Brassica carinata HOM05D000881 ORTHO05D000666 4.5e-12 75.1 96 39.6
CANSAT64G1865 Cannabis sativa HOM05D000881 ORTHO05D000666 4.5e-12 75.1 88 33.0
ClCG04G012640 Citrullus lanatus HOM05D000881 ORTHO05D000666 5.9e-12 74.7 89 37.1
Phvul.004G140900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 5.9e-12 74.7 89 37.1
THA.LOC104800241 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 1.0e-11 73.9 92 41.3
Haze_03451 Corylus avellana HOM05D000881 ORTHO05D000666 1.3e-11 73.6 88 40.9
Haze_03455 Corylus avellana HOM05D000881 ORTHO05D000666 1.3e-11 73.6 88 40.9
Gohir.D11G244000 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.3e-11 73.6 89 34.8
Gorai.007G259500 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.3e-11 73.6 89 34.8
Rhsim03G0053400 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.3e-11 73.6 90 37.8
RcHm_v2.0_Chr3g0496561 Rosa chinensis HOM05D000881 ORTHO05D000666 1.3e-11 73.6 94 36.2
SpUn0001_0960 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.3e-11 73.6 98 39.8
Medtr7g086130 Medicago truncatula HOM05D000881 ORTHO05D000666 1.7e-11 73.2 94 39.4
CANSAT78G1545 Cannabis sativa HOM05D000881 ORTHO05D000666 2.2e-11 72.8 99 36.4
COL.COLO4_32968 Corchorus olitorius HOM05D000881 ORTHO05D000666 2.2e-11 72.8 96 35.4
Thecc.05G246400 Theobroma cacao HOM05D000881 ORTHO05D000666 2.2e-11 72.8 89 40.4
MSTRG.10426 Avicennia marina HOM05D000881 ORTHO05D000666 2.9e-11 72.4 95 37.9
Potri.013G054700 Populus trichocarpa HOM05D000881 ORTHO05D000666 3.8e-11 72.0 89 34.8
MBI11_g17410_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.0e-11 71.6 89 38.2
AT1G54400 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 6.5e-11 71.2 97 40.2
MD14G1004900 Malus domestica HOM05D000881 ORTHO05D000666 6.5e-11 71.2 91 39.6
Dinv11927 Davidia involucrata HOM05D000881 ORTHO05D000666 8.4e-11 70.9 89 37.1
Sabra13G0049100 Salix brachista HOM05D000881 ORTHO05D000666 8.4e-11 70.9 92 39.1
Sabra13G0049200 Salix brachista HOM05D000881 ORTHO05D000666 8.4e-11 70.9 92 39.1
Sabra13G0049300 Salix brachista HOM05D000881 ORTHO05D000666 8.4e-11 70.9 92 39.1
MELO3C001943.2 Cucumis melo HOM05D000881 ORTHO05D000666 1.1e-10 70.5 89 34.8
Gorai.013G194400 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.1e-10 70.5 135 30.4
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.4e-10 70.1 88 35.2
Cfa017677 Carpinus fangiana HOM05D000881 ORTHO05D000666 1.9e-10 69.7 86 38.4
Actinidia37794 Actinidia chinensis HOM05D000881 ORTHO05D000666 2.5e-10 69.3 92 38.0
BcaC01g06208 Brassica carinata HOM05D000881 ORTHO05D000666 2.5e-10 69.3 96 37.5
A03p15510 Brassica napus HOM05D000881 ORTHO05D000666 2.5e-10 69.3 96 37.5
C03p18100 Brassica napus HOM05D000881 ORTHO05D000666 2.5e-10 69.3 96 37.5
BolC3t14213H Brassica oleracea HOM05D000881 ORTHO05D000666 2.5e-10 69.3 96 37.5
BraA03t10844Z Brassica rapa HOM05D000881 ORTHO05D000666 2.5e-10 69.3 96 37.5
Duzib177G0536 Durio zibethinus HOM05D000881 ORTHO05D000666 2.5e-10 69.3 134 32.1
Gohir.D13G167700 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.5e-10 69.3 95 35.8
Gohir.A13G164900 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.2e-10 68.9 135 29.6
Medtr6g478190 Medicago truncatula HOM05D000881 ORTHO05D000666 3.2e-10 68.9 137 32.8
Carub.0002s0956 Capsella rubella HOM05D000881 ORTHO05D000666 4.2e-10 68.6 96 36.5
FvH4_7g04830 Fragaria vesca HOM05D000881 ORTHO05D000666 5.5e-10 68.2 97 38.1
FAN03G2527 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.5e-10 68.2 97 36.1
FAN06G1651 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.5e-10 68.2 97 38.1
MD12G1007600 Malus domestica HOM05D000881 ORTHO05D000666 5.5e-10 68.2 91 37.4
Gorai.004G251000 Gossypium raimondii HOM05D000881 ORTHO05D000666 7.2e-10 67.8 90 34.4
Manes.09G138700 Manihot esculenta HOM05D000881 ORTHO05D000666 7.2e-10 67.8 91 38.5
TPR.G22510 Trifolium pratense HOM05D000881 ORTHO05D000666 7.2e-10 67.8 91 39.6
vmacro07553 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 7.2e-10 67.8 90 38.9
VMungo0331G1612 Vigna mungo HOM05D008573 ORTHO05D009911 7.2e-10 67.8 124 31.5
AL1G64700 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 9.3e-10 67.4 95 37.9
BcaB01g04224 Brassica carinata HOM05D000881 ORTHO05D000666 9.3e-10 67.4 106 35.8
Rhsim03G0053300 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.2e-09 67.0 94 35.1
Rhsim03G0053700 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.2e-09 67.0 90 36.7
Sabra09G0120900 Salix brachista HOM05D000881 ORTHO05D000666 1.2e-09 67.0 95 38.9
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.2e-09 67.0 91 33.0
AUR62039721 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.6e-09 66.6 88 34.1
Prupe.7G008500 Prunus persica HOM05D000881 ORTHO05D000666 1.6e-09 66.6 135 36.3
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 2.7e-09 65.9 89 33.7
Lsat_1_v5_gn_1_56241 Lactuca sativa HOM05D000881 ORTHO05D000666 2.7e-09 65.9 91 37.4
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 3.5e-09 65.5 92 38.0
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 3.5e-09 65.5 92 38.0
PGR042G3352 Punica granatum HOM05D000881 ORTHO05D000666 3.5e-09 65.5 90 33.3
AUR62036271 Chenopodium quinoa HOM05D000881 ORTHO05D000666 4.6e-09 65.1 88 33.0
CsaV3_1G005060 Cucumis sativus L. HOM05D000881 ORTHO05D000666 4.6e-09 65.1 88 30.7
Gohir.A08G219100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 4.6e-09 65.1 90 33.3
Gohir.D08G236040 Gossypium hirsutum HOM05D000881 ORTHO05D000666 4.6e-09 65.1 90 33.3
Rhsim03G0053200 Rhododendron simsii HOM05D000881 ORTHO05D000666 4.6e-09 65.1 90 36.7
CARHR055530 Cardamine hirsuta HOM05D000881 ORTHO05D000666 6.1e-09 64.7 89 37.1
Haze_03567 Corylus avellana HOM05D021788 ORTHO05D000666 7.9e-09 64.3 98 34.7
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 7.9e-09 64.3 89 31.5
Gohir.A08G219200 Gossypium hirsutum HOM05D000881 ORTHO05D000666 7.9e-09 64.3 97 38.1
Duzib106G1449 Durio zibethinus HOM05D000881 ORTHO05D000666 1.0e-08 63.9 88 35.2
Prupe.5G242900 Prunus persica HOM05D000881 ORTHO05D000666 1.0e-08 63.9 91 35.2
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.3e-08 63.5 89 32.6
Gohir.D08G236060 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.3e-08 63.5 97 37.1
Gohir.D08G236100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.3e-08 63.5 91 38.5
Gorai.004G251100 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.3e-08 63.5 97 37.1
HanXRQChr01g0026391 Helianthus annuus HOM05D000881 ORTHO05D000666 1.3e-08 63.5 88 34.1
Actinidia03943 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.8e-08 63.2 90 35.6
Oeu035466.1 Olea europaea HOM05D000881 ORTHO05D000666 1.8e-08 63.2 125 34.4
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 3.0e-08 62.4 91 35.2
Gohir.A08G219300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.0e-08 62.4 91 39.6
Gorai.004G251300 Gossypium raimondii HOM05D000881 ORTHO05D000666 3.0e-08 62.4 91 37.4
Prupe.7G008300 Prunus persica HOM05D000881 ORTHO05D000666 3.0e-08 62.4 151 29.1
SGA_v2.0_scaffold392G50662 Striga asiatica HOM05D000881 ORTHO05D000666 3.0e-08 62.4 89 34.8
Migut.L01864 Erythranthe guttata HOM05D000881 ORTHO05D000666 3.9e-08 62.0 89 40.4
Gohir.A13G097700 Gossypium hirsutum HOM05D019023 ORTHO05D022425 3.9e-08 62.0 93 32.3
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 3.9e-08 62.0 89 32.6
Actinidia37795 Actinidia chinensis HOM05D000881 ORTHO05D000666 5.1e-08 61.6 89 34.8
arahy.Tifrunner.gnm1.ann1.JC7BND Arachis hypogaea HOM05D000881 ORTHO05D000666 5.1e-08 61.6 73 39.7
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 5.1e-08 61.6 89 30.3
Haze_03563 Corylus avellana HOM05D021788 ORTHO05D000666 5.1e-08 61.6 119 29.4
Sc06g0002830 Simmondsia chinensis HOM05D000881 ORTHO05D000666 5.1e-08 61.6 89 34.8
Haze_03560 Corylus avellana HOM05D021788 ORTHO05D000666 6.7e-08 61.2 122 29.5
Oeu038472.1 Olea europaea HOM05D000881 ORTHO05D000666 1.9e-07 59.7 90 30.0
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 2.5e-07 59.3 89 30.3
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 2.5e-07 59.3 89 27.0
Duzib168G0272 Durio zibethinus HOM05D000881 ORTHO05D000666 3.3e-07 58.9 88 36.4
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 3.3e-07 58.9 89 29.2
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.3e-07 58.9 90 32.2
CiPaw.16G038500 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.3e-07 58.5 133 34.6
Cc06_g07270 Coffea canephora HOM05D000881 ORTHO05D000666 4.3e-07 58.5 88 35.2
Os05g0592000 Oryza sativa ssp. japonica HOM05D000881 ORTHO05D000666 4.3e-07 58.5 90 28.9
Gohir.D13G102400 Gossypium hirsutum HOM05D019023 ORTHO05D022425 5.7e-07 58.2 97 33.0
MD11G1178700 Malus domestica HOM05D000881 ORTHO05D000666 5.7e-07 58.2 88 35.2
Ah.12g059710 Amaranthus hybridus HOM05D000881 ORTHO05D000666 7.4e-07 57.8 89 34.8
Gorai.013G114700 Gossypium raimondii HOM05D019023 ORTHO05D022425 7.4e-07 57.8 92 34.8
HanXRQChr11g0347921 Helianthus annuus HOM05D000881 ORTHO05D000666 7.4e-07 57.8 89 31.5
Zm00001eb297350 Zea mays HOM05D000881 ORTHO05D037054 7.4e-07 57.8 99 29.3
Nn4g23057 Nelumbo nucifera HOM05D000881 ORTHO05D000666 9.7e-07 57.4 90 35.6
Zm00001eb032310 Zea mays HOM05D000881 ORTHO05D000666 9.7e-07 57.4 88 28.4
arahy.Tifrunner.gnm1.ann1.UXI833 Arachis hypogaea HOM05D000881 ORTHO05D000666 1.3e-06 57.0 73 37.0
Cfa010622 Carpinus fangiana HOM05D021788 ORTHO05D000666 1.3e-06 57.0 88 34.1
CDE05G3520 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 1.3e-06 57.0 88 35.2
Duzib106G1235 Durio zibethinus HOM05D000881 ORTHO05D000666 1.3e-06 57.0 88 31.8
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 1.6e-06 56.6 89 31.5
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 1.6e-06 56.6 96 33.3
Duzib128G0083 Durio zibethinus HOM05D000391 ORTHO05D010205 1.6e-06 56.6 65 41.5
Manes.04G059912 Manihot esculenta HOM05D000881 ORTHO05D000666 1.6e-06 56.6 88 34.1
Oeu012471.1 Olea europaea HOM05D000881 ORTHO05D000666 1.6e-06 56.6 90 28.9
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 1.6e-06 56.6 89 32.6
PGSC0003DMG400008713 Solanum tuberosum HOM05D000881 ORTHO05D000666 1.6e-06 56.6 90 32.2
CDE01G0150 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 2.2e-06 56.2 88 31.8
CDE04G0961 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 2.2e-06 56.2 88 31.8
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 2.2e-06 56.2 88 28.4
HanXRQChr04g0102121 Helianthus annuus HOM05D000881 ORTHO05D000666 2.2e-06 56.2 89 30.3
Oeu027039.1 Olea europaea HOM05D000881 ORTHO05D000666 2.2e-06 56.2 90 26.7
PSO591G0061 Papaver somniferum HOM05D000881 ORTHO05D000666 2.2e-06 56.2 90 33.3
PSO832G1594 Papaver somniferum HOM05D000881 ORTHO05D000666 2.2e-06 56.2 90 33.3
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 2.8e-06 55.8 91 27.5
MELO3C015589.2 Cucumis melo HOM05D000881 ORTHO05D000666 3.7e-06 55.5 91 35.2
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 4.8e-06 55.1 113 26.5
CiPaw.14G092300 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.8e-06 55.1 88 31.8
CiPaw.16G038300 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.8e-06 55.1 106 32.1
Lsat_1_v5_gn_1_25141 Lactuca sativa HOM05D000881 ORTHO05D000666 4.8e-06 55.1 89 31.5
Manes.08G146200 Manihot esculenta HOM05D000881 ORTHO05D000666 4.8e-06 55.1 114 35.1
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 4.8e-06 55.1 89 27.0
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 6.3e-06 54.7 109 26.6
BcaB06g28112 Brassica carinata HOM05D000881 ORTHO05D000666 6.3e-06 54.7 91 30.8
COL.COLO4_32970 Corchorus olitorius HOM05D000881 ORTHO05D000666 6.3e-06 54.7 92 29.3
AUR62021735 Chenopodium quinoa HOM05D000881 ORTHO05D000666 8.2e-06 54.3 90 34.4
HanXRQChr16g0503171 Helianthus annuus HOM05D000881 ORTHO05D000666 8.2e-06 54.3 89 32.6


User provided reference genes

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