Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.4e-87 325.5 168 100.0
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 4.9e-11 72.0 45 84.4
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 3.5e-09 65.9 45 77.8
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 3.5e-09 65.9 45 73.3
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 7.8e-09 64.7 45 73.3
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.3e-08 63.9 45 77.8
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.3e-08 63.2 45 71.1
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 3.0e-08 62.8 45 68.9
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 5.0e-08 62.0 45 73.3
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 6.6e-08 61.6 42 76.2
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 6.6e-08 61.6 42 76.2
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 8.6e-08 61.2 42 76.2
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 8.6e-08 61.2 42 76.2
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.5e-07 60.5 42 73.8
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.5e-07 60.5 42 76.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.5e-07 60.5 43 72.1
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.5e-07 60.5 45 73.3
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.9e-07 60.1 42 73.8
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.9e-07 60.1 45 73.3
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.9e-07 60.1 45 68.9
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.5e-07 59.7 45 68.9
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.5e-07 59.7 49 67.3
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.3e-07 59.3 45 71.1
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 3.3e-07 59.3 49 63.3
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 3.3e-07 59.3 45 71.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.3e-07 58.9 45 68.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 4.3e-07 58.9 42 71.4
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 4.3e-07 58.9 42 71.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 4.3e-07 58.9 42 71.4
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.3e-07 58.9 45 71.1
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 4.3e-07 58.9 45 71.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 4.3e-07 58.9 42 71.4
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 4.3e-07 58.9 49 67.3
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 4.3e-07 58.9 49 67.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 4.3e-07 58.9 45 66.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 5.6e-07 58.5 42 73.8
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.6e-07 58.5 42 69.0
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 7.3e-07 58.2 45 68.9
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 7.3e-07 58.2 46 67.4
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 7.3e-07 58.2 46 67.4
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.3e-07 58.2 49 65.3
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 9.5e-07 57.8 45 68.9
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 9.5e-07 57.8 42 73.8
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.5e-07 57.8 45 71.1
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 9.5e-07 57.8 45 68.9
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 9.5e-07 57.8 42 71.4
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 9.5e-07 57.8 45 68.9
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 9.5e-07 57.8 49 61.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.2e-06 57.4 45 62.2
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.2e-06 57.4 45 68.9
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.2e-06 57.4 46 67.4
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.2e-06 57.4 42 71.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.2e-06 57.4 45 64.4
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-06 57.0 42 69.0
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.6e-06 57.0 45 68.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.6e-06 57.0 45 68.9
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.6e-06 57.0 45 68.9
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 66.7
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 66.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.1e-06 56.6 42 69.0
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 66.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.1e-06 56.6 42 71.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 2.1e-06 56.6 45 68.9
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.1e-06 56.6 42 71.4
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 2.1e-06 56.6 43 67.4
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.8e-06 56.2 45 66.7
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.8e-06 56.2 45 66.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 2.8e-06 56.2 42 71.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.8e-06 56.2 42 73.8
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.8e-06 56.2 45 64.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.8e-06 56.2 45 64.4
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 2.8e-06 56.2 42 69.0
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.6e-06 55.8 48 64.6
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.6e-06 55.8 42 69.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.7e-06 55.5 42 69.0
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.7e-06 55.5 42 66.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 4.7e-06 55.5 45 64.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 4.7e-06 55.5 49 61.2
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 4.7e-06 55.5 49 63.3
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 6.2e-06 55.1 134 39.6
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.2e-06 55.1 42 69.0
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 6.2e-06 55.1 45 62.2
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 8.0e-06 54.7 45 64.4


User provided reference genes

Program Settings