Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017661 Carpinus fangiana HOM05D000825 ORTHO05D033059 1.8e-26 121.7 58 100.0
QL03p054799 Quercus lobata HOM05D000825 ORTHO05D003684 3.7e-19 97.4 57 73.7
Potri.008G178800 Populus trichocarpa HOM05D000825 ORTHO05D003684 2.3e-16 88.2 56 71.4
CiPaw.05G115700 Carya illinoinensis HOM05D000825 ORTHO05D003684 1.9e-15 85.1 58 65.5
Sabra08G0136400 Salix brachista HOM05D000825 ORTHO05D003462 2.1e-14 81.6 55 65.5
TWI36G0189 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 2.8e-14 81.3 58 58.6
Manes.12G015000 Manihot esculenta HOM05D000825 ORTHO05D003684 4.7e-14 80.5 58 67.2
Thecc.02G274000 Theobroma cacao HOM05D000825 ORTHO05D003684 1.1e-13 79.3 56 62.5
COL.COLO4_23618 Corchorus olitorius HOM05D000825 ORTHO05D003684 3.1e-13 77.8 56 58.9
Dinv25685 Davidia involucrata HOM05D000825 ORTHO05D003684 4.0e-13 77.4 58 60.3
Atru.chr11.2242 Acer truncatum HOM05D000825 ORTHO05D003684 5.2e-13 77.0 59 66.1
Prupe.1G233600 Prunus persica HOM05D000825 ORTHO05D003684 5.2e-13 77.0 54 63.0
FvH4_4g24350 Fragaria vesca HOM05D000825 ORTHO05D003684 6.8e-13 76.6 54 63.0
FAN07G2829 Fragaria x ananassa HOM05D000825 ORTHO05D003462 6.8e-13 76.6 54 63.0
FAN12G2056 Fragaria x ananassa HOM05D000825 ORTHO05D003684 6.8e-13 76.6 54 63.0
FAN17G0127 Fragaria x ananassa HOM05D000825 ORTHO05D003462 6.8e-13 76.6 54 63.0
FAN22G1830 Fragaria x ananassa HOM05D000825 ORTHO05D003462 6.8e-13 76.6 54 63.0
MD13G1111900 Malus domestica HOM05D000825 ORTHO05D003684 6.8e-13 76.6 55 69.1
Cfa007265 Carpinus fangiana HOM05D000825 ORTHO05D003684 8.9e-13 76.3 58 62.1
Nn4g22416 Nelumbo nucifera HOM05D000825 ORTHO05D003684 8.9e-13 76.3 58 60.3
Atru.chr11.2257 Acer truncatum HOM05D000825 ORTHO05D003684 1.2e-12 75.9 59 64.4
CANSAT01G0340 Cannabis sativa HOM05D000825 ORTHO05D003684 1.2e-12 75.9 58 65.5
DCAR_021760 Daucus carota HOM05D000825 ORTHO05D003684 1.2e-12 75.9 58 55.2
RcHm_v2.0_Chr4g0431211 Rosa chinensis HOM05D000825 ORTHO05D003684 1.2e-12 75.9 54 61.1
Lj6C821G11 Lonicera japonica HOM05D000825 ORTHO05D003684 1.5e-12 75.5 58 62.1
Manes.15G157200 Manihot esculenta HOM05D000825 ORTHO05D003684 2.0e-12 75.1 58 55.2
Gohir.A04G138600 Gossypium hirsutum HOM05D000825 ORTHO05D003684 2.6e-12 74.7 51 62.7
Hma1.2p1_0279F.1_g112350 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 2.6e-12 74.7 58 58.6
TAR622G1438 Trochodendron aralioides HOM05D000825 ORTHO05D003684 2.6e-12 74.7 58 56.9
Haze_14823 Corylus avellana HOM05D000825 ORTHO05D003684 3.4e-12 74.3 58 62.1
MD16G1111500 Malus domestica HOM05D000825 ORTHO05D003684 4.4e-12 73.9 55 63.6
Gohir.D04G181500 Gossypium hirsutum HOM05D000825 ORTHO05D003684 7.5e-12 73.2 48 64.6
Gorai.012G174800 Gossypium raimondii HOM05D000825 ORTHO05D003684 7.5e-12 73.2 48 64.6
Sed0016345 Sechium edule HOM05D000825 ORTHO05D003684 7.5e-12 73.2 57 56.1
COL.COLO4_29293 Corchorus olitorius HOM05D000825 ORTHO05D003684 9.8e-12 72.8 56 53.6
PGR142G0599 Punica granatum HOM05D000825 ORTHO05D003684 9.8e-12 72.8 58 51.7
QL02p072697 Quercus lobata HOM05D000825 ORTHO05D003684 9.8e-12 72.8 56 55.4
Duzib268G1792 Durio zibethinus HOM05D000825 ORTHO05D003684 1.3e-11 72.4 55 54.5
Eucgr.J02304 Eucalyptus grandis HOM05D000825 ORTHO05D003684 1.3e-11 72.4 55 61.8
Nn3g16547 Nelumbo nucifera HOM05D000825 ORTHO05D003684 1.3e-11 72.4 58 58.6
Potri.001G335100 Populus trichocarpa HOM05D000825 ORTHO05D003684 1.3e-11 72.4 55 58.2
Cpa.g.c36007 Carica papaya HOM05D000825 ORTHO05D003684 1.7e-11 72.0 55 56.4
Gohir.D09G034300 Gossypium hirsutum HOM05D000825 ORTHO05D003684 2.2e-11 71.6 56 51.8
Gorai.006G039300 Gossypium raimondii HOM05D000825 ORTHO05D003684 2.2e-11 71.6 56 51.8
MD09G1016200 Malus domestica HOM05D000825 ORTHO05D003684 2.2e-11 71.6 58 55.2
Nitab4.5_0000040g0460 Nicotiana tabacum HOM05D000825 ORTHO05D003684 2.2e-11 71.6 58 53.4
TAR374G0756 Trochodendron aralioides HOM05D000825 ORTHO05D003684 2.2e-11 71.6 58 55.2
CiPaw.04G034000 Carya illinoinensis HOM05D000825 ORTHO05D003684 2.9e-11 71.2 58 56.9
Duzib187G1246 Durio zibethinus HOM05D000825 ORTHO05D003684 2.9e-11 71.2 56 55.4
Gohir.A09G033700 Gossypium hirsutum HOM05D000825 ORTHO05D003684 2.9e-11 71.2 56 50.0
Lj7A607G33 Lonicera japonica HOM05D000825 ORTHO05D003684 2.9e-11 71.2 58 55.2
SalBow1G2383 Salvia bowleyana HOM05D000825 ORTHO05D003684 2.9e-11 71.2 58 51.7
Carub.0005s0381 Capsella rubella HOM05D000825 ORTHO05D003684 3.7e-11 70.9 54 55.6
Nitab4.5_0008789g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003684 3.7e-11 70.9 58 51.7
RcHm_v2.0_Chr2g0174621 Rosa chinensis HOM05D000825 ORTHO05D003684 3.7e-11 70.9 56 53.6
unitig_52.g17647 Utricularia gibba HOM05D000825 ORTHO05D003684 3.7e-11 70.9 55 60.0
Ciclev10032558m.g Citrus clementina HOM05D000825 ORTHO05D003684 4.9e-11 70.5 54 59.3
Manes.12G015100 Manihot esculenta HOM05D000825 ORTHO05D003684 4.9e-11 70.5 56 58.9
AT3G25950 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 6.4e-11 70.1 58 58.6
Oeu050428.1 Olea europaea HOM05D000825 ORTHO05D003684 6.4e-11 70.1 58 55.2
FAN05G0249 Fragaria x ananassa HOM05D000825 ORTHO05D003684 8.3e-11 69.7 58 51.7
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 8.3e-11 69.7 58 51.7
PGR083G2872 Punica granatum HOM05D000825 ORTHO05D003684 8.3e-11 69.7 58 51.7
Sp2g15180 Schrenkiella parvula HOM05D000825 ORTHO05D003684 8.3e-11 69.7 58 56.9
Glyma.19G084400 Glycine max HOM05D000825 ORTHO05D003684 1.1e-10 69.3 58 53.4
MBI11_g21376_MAGBIO Magnolia biondii HOM05D000825 ORTHO05D003684 1.1e-10 69.3 55 52.7
AL5G14610 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 1.4e-10 68.9 55 54.5
CSS0041807 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 1.9e-10 68.6 55 54.5
Carub.0005s0552 Capsella rubella HOM05D000825 ORTHO05D003684 1.9e-10 68.6 55 56.4
Cpa.g.sc43.9 Carica papaya HOM05D000825 ORTHO05D003684 1.9e-10 68.6 55 50.9
Lalb_Chr14g0363141 Lupinus albus HOM05D000825 ORTHO05D003684 1.9e-10 68.6 58 50.0
Lalb_Chr24g0403391 Lupinus albus HOM05D000825 ORTHO05D003684 1.9e-10 68.6 58 51.7
BcaC06g31101 Brassica carinata HOM05D000825 ORTHO05D003684 2.4e-10 68.2 58 55.2
FAN02G3782 Fragaria x ananassa HOM05D000825 ORTHO05D003684 2.4e-10 68.2 58 50.0
Sc03g0006950 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.4e-10 68.2 58 48.3
Aa31LG2G6380 Aethionema arabicum HOM05D000825 ORTHO05D003684 3.2e-10 67.8 58 55.2
Thhalv10004816m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 3.2e-10 67.8 49 57.1
MD17G1016700 Malus domestica HOM05D000825 ORTHO05D003684 3.2e-10 67.8 58 51.7
TWI36G0924 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 3.2e-10 67.8 58 50.0
A06p42340 Brassica napus HOM05D000825 ORTHO05D003684 4.1e-10 67.4 58 55.2
C07p35000 Brassica napus HOM05D000825 ORTHO05D003684 4.1e-10 67.4 58 55.2
BraA06t27149Z Brassica rapa HOM05D000825 ORTHO05D003684 4.1e-10 67.4 58 55.2
ClCG05G013260 Citrullus lanatus HOM05D000825 ORTHO05D003684 4.1e-10 67.4 55 50.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.1e-10 67.4 48 64.6
AL5G16450 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 5.4e-10 67.0 55 54.5
CARHR146940 Cardamine hirsuta HOM05D000825 ORTHO05D003684 5.4e-10 67.0 58 55.2
Ciclev10016456m.g Citrus clementina HOM05D000825 ORTHO05D003684 5.4e-10 67.0 56 57.1
Peaxi162Scf00080g00187 Petunia axillaris HOM05D000825 ORTHO05D003684 5.4e-10 67.0 55 54.5
PGR102G1594 Punica granatum HOM05D000825 ORTHO05D003684 5.4e-10 67.0 52 59.6
Glyma.16G062400 Glycine max HOM05D000825 ORTHO05D003684 7.1e-10 66.6 58 50.0
Prupe.3G301200 Prunus persica HOM05D000825 ORTHO05D003684 7.1e-10 66.6 58 50.0
CSS0018664 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 9.2e-10 66.2 49 57.1
Duzib147G0600 Durio zibethinus HOM05D000825 ORTHO05D003684 9.2e-10 66.2 54 51.9
Migut.H00018 Erythranthe guttata HOM05D000825 ORTHO05D003684 9.2e-10 66.2 64 50.0
Thecc.04G029000 Theobroma cacao HOM05D000825 ORTHO05D003684 1.2e-09 65.9 56 48.2
AT3G27270 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 1.6e-09 65.5 54 51.9
BcaC06g33935 Brassica carinata HOM05D000825 ORTHO05D003684 1.6e-09 65.5 58 53.4
Duzib251G0166 Durio zibethinus HOM05D000825 ORTHO05D003684 1.6e-09 65.5 47 57.4
Thhalv10005332m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 1.6e-09 65.5 56 57.1
Lju41C49G5 Lonicera japonica HOM05D000825 ORTHO05D003684 2.1e-09 65.1 55 52.7
BcaB07g30171 Brassica carinata HOM05D000825 ORTHO05D003684 2.7e-09 64.7 56 57.1
Duzib268G0015 Durio zibethinus HOM05D000825 ORTHO05D003684 2.7e-09 64.7 56 57.1
Migut.B01080 Erythranthe guttata HOM05D000825 ORTHO05D003684 2.7e-09 64.7 59 54.2
Sp2g16410 Schrenkiella parvula HOM05D000825 ORTHO05D003684 2.7e-09 64.7 56 51.8
MSTRG.525 Avicennia marina HOM05D000825 ORTHO05D003684 3.5e-09 64.3 55 52.7
CANSAT64G2780 Cannabis sativa HOM05D000825 ORTHO05D003684 3.5e-09 64.3 56 55.4
MELO3C014858.2 Cucumis melo HOM05D000825 ORTHO05D003684 3.5e-09 64.3 55 50.9
VMungo1383G1969 Vigna mungo HOM05D000825 ORTHO05D003684 3.5e-09 64.3 59 52.5
Aqoxy5G03524 Aquilegia oxysepala HOM05D000825 ORTHO05D003684 4.6e-09 63.9 60 53.3
BcaC03g17452 Brassica carinata HOM05D000825 ORTHO05D003684 4.6e-09 63.9 56 53.6
A02p35290 Brassica napus HOM05D000825 ORTHO05D003684 4.6e-09 63.9 56 53.6
C02p54000 Brassica napus HOM05D000825 ORTHO05D003684 4.6e-09 63.9 56 53.6
BolC2t11465H Brassica oleracea HOM05D000825 ORTHO05D003684 4.6e-09 63.9 56 53.6
BraA02t08532Z Brassica rapa HOM05D000825 ORTHO05D003684 4.6e-09 63.9 56 53.6
CsaV3_3G027280 Cucumis sativus L. HOM05D000825 ORTHO05D003684 4.6e-09 63.9 55 49.1
Sc04g0009930 Simmondsia chinensis HOM05D000825 ORTHO05D003684 4.6e-09 63.9 50 58.0
Aa31LG11G15070 Aethionema arabicum HOM05D000825 ORTHO05D003684 6.0e-09 63.5 57 54.4
BcaNung03168 Brassica carinata HOM05D000825 ORTHO05D003684 6.0e-09 63.5 53 50.9
HanXRQChr15g0474691 Helianthus annuus HOM05D000825 ORTHO05D003684 6.0e-09 63.5 51 52.9
Phvul.008G150000 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 1.0e-08 62.8 48 56.2
PGSC0003DMG400017458 Solanum tuberosum HOM05D000825 ORTHO05D003684 1.0e-08 62.8 55 56.4
THA.LOC104823970 Tarenaya hassleriana HOM05D000825 ORTHO05D003684 1.0e-08 62.8 55 54.5
BolC7t44032H Brassica oleracea HOM05D000825 ORTHO05D003684 1.3e-08 62.4 47 57.4
CARHR199050 Cardamine hirsuta HOM05D000825 ORTHO05D003684 1.3e-08 62.4 60 51.7
DCAR_026481 Daucus carota HOM05D000825 ORTHO05D003684 1.3e-08 62.4 57 49.1
Rhsim12G0105600 Rhododendron simsii HOM05D000825 ORTHO05D003684 1.3e-08 62.4 48 62.5
Sp6g29750 Schrenkiella parvula HOM05D000825 ORTHO05D003684 1.3e-08 62.4 53 49.1
Cc07_g00510 Coffea canephora HOM05D000825 ORTHO05D003684 2.3e-08 61.6 58 50.0
Solyc05g014550.1 Solanum lycopersicum HOM05D000825 ORTHO05D003684 2.3e-08 61.6 55 54.5
VMungo0464G1017 Vigna mungo HOM05D000825 ORTHO05D003684 3.0e-08 61.2 58 48.3
Glyma.05G073901 Glycine max HOM05D000825 ORTHO05D003684 3.9e-08 60.8 56 51.8
Glyma.19G076700 Glycine max HOM05D000825 ORTHO05D003684 3.9e-08 60.8 58 48.3
HanXRQChr09g0255951 Helianthus annuus HOM05D000825 ORTHO05D003684 3.9e-08 60.8 54 51.9
Atru.chr6.2498 Acer truncatum HOM05D000825 ORTHO05D003684 5.1e-08 60.5 60 50.0
Carub.0006s1248 Capsella rubella HOM05D000825 ORTHO05D003684 5.1e-08 60.5 61 50.8
AT5G14285 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 6.6e-08 60.1 61 49.2
CARHR148530 Cardamine hirsuta HOM05D000825 ORTHO05D003684 6.6e-08 60.1 55 50.9
Phvul.004G056600 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 6.6e-08 60.1 58 46.6
Lj1g0005346 Lotus japonicus HOM05D000825 ORTHO05D003684 8.6e-08 59.7 59 47.5
Eucgr.B03459 Eucalyptus grandis HOM05D000825 ORTHO05D003684 1.1e-07 59.3 54 53.7
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 1.1e-07 59.3 49 55.1
Sopen05g009600 Solanum pennellii HOM05D000825 ORTHO05D003684 1.1e-07 59.3 55 52.7
Actinidia33260 Actinidia chinensis HOM05D000825 ORTHO05D003684 1.5e-07 58.9 57 49.1
ClCG11G013900 Citrullus lanatus HOM05D000825 ORTHO05D003684 1.9e-07 58.5 50 52.0
MELO3C011890.2 Cucumis melo HOM05D000825 ORTHO05D003684 1.9e-07 58.5 56 48.2
AL6G24965 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 2.5e-07 58.2 58 50.0
BcaB08g36972 Brassica carinata HOM05D000825 ORTHO05D003684 2.5e-07 58.2 53 50.9
A10p24210 Brassica napus HOM05D000825 ORTHO05D003684 2.5e-07 58.2 57 52.6
BraA10t44486Z Brassica rapa HOM05D000825 ORTHO05D003684 2.5e-07 58.2 57 52.6
Sed0006825 Sechium edule HOM05D000825 ORTHO05D003684 2.5e-07 58.2 50 58.0
THA.LOC104825693 Tarenaya hassleriana HOM05D000825 ORTHO05D003684 2.5e-07 58.2 57 47.4
BcaB08g36979 Brassica carinata HOM05D000825 ORTHO05D003684 3.3e-07 57.8 57 50.9
C09p62900 Brassica napus HOM05D000825 ORTHO05D003684 3.3e-07 57.8 57 50.9
BolC9t59127H Brassica oleracea HOM05D000825 ORTHO05D003684 3.3e-07 57.8 57 50.9
HanXRQChr08g0207471 Helianthus annuus HOM05D000825 ORTHO05D003684 3.3e-07 57.8 47 55.3
Thhalv10014472m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 5.6e-07 57.0 56 48.2
Ca_25816_v3 Cicer arietinum L. HOM05D000825 ORTHO05D003684 9.5e-07 56.2 57 43.9
Sopen02g017140 Solanum pennellii HOM05D000825 ORTHO05D003684 1.6e-06 55.5 55 43.6
EL10Ac6g13435 Beta vulgaris HOM05D000825 ORTHO05D003684 2.1e-06 55.1 58 43.1
C02p06660 Brassica napus HOM05D000825 ORTHO05D033059 2.8e-06 54.7 44 56.8
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 4.7e-06 53.9 48 54.2
CsaV3_5G030510 Cucumis sativus L. HOM05D000825 ORTHO05D003684 8.1e-06 53.1 46 54.3


User provided reference genes

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