Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.3e-297 1024.2 510 100.0
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.4e-263 911.8 509 88.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 6.6e-253 877.1 509 85.1
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.5e-244 848.6 514 81.5
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.4e-242 842.8 509 81.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.5e-241 839.3 509 81.9
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 9.9e-241 836.6 514 81.3
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.2e-240 835.5 515 80.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.4e-240 833.6 509 80.6
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.4e-239 832.8 507 80.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.9e-239 832.4 510 80.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.2e-239 831.2 510 79.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 7.1e-239 830.5 508 81.5
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 3.5e-238 828.2 510 80.8
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.1e-237 824.3 510 80.8
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.1e-235 817.0 507 79.9
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.1e-234 815.1 509 78.4
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.8e-233 810.8 510 77.6
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 5.8e-233 810.8 510 76.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 9.9e-233 810.1 510 77.6
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-231 806.6 510 77.5
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.9e-231 805.8 510 77.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.4e-231 804.3 513 77.6
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.5e-230 801.6 548 73.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 7.9e-230 800.4 509 75.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.3e-229 799.7 510 76.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.8e-229 799.3 507 76.9
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.9e-229 798.1 510 75.5
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.1e-229 797.7 513 76.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.1e-228 796.6 509 74.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.1e-227 792.3 510 77.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-227 792.0 548 71.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.1e-227 790.4 511 77.5
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.1e-226 788.5 548 71.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 6.9e-226 787.3 510 76.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 6.9e-226 787.3 511 77.3
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.0e-226 786.9 509 78.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.7e-224 782.7 514 74.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.7e-224 782.7 509 78.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 2.9e-224 781.9 509 74.3
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.9e-224 781.2 478 79.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 6.4e-224 780.8 510 75.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.4e-223 778.9 474 79.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.5e-222 775.0 476 79.0
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.9e-222 773.9 514 73.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.9e-222 773.9 493 77.7
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.8e-221 772.7 507 74.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.5e-220 769.6 510 74.1
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.6e-220 767.7 514 75.5
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 9.6e-220 766.9 505 74.9
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.8e-219 765.4 510 74.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 3.7e-219 765.0 510 73.7
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 4.8e-219 764.6 514 73.2
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.8e-219 764.6 601 66.6
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-218 763.1 510 73.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.4e-218 762.3 508 75.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.4e-218 762.3 508 74.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 72.6
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.5e-217 759.6 514 72.8
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-217 759.2 510 73.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.0e-217 759.2 511 73.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.6e-217 758.8 511 74.0
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 3.4e-217 758.4 511 73.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 3.4e-217 758.4 511 73.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 4.5e-217 758.1 518 73.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 5.8e-217 757.7 526 70.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 5.8e-217 757.7 513 72.3
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 7.6e-217 757.3 474 79.3
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.7e-216 756.1 510 73.7
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.7e-216 756.1 510 73.3
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.9e-216 755.4 510 73.5
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 4.9e-216 754.6 510 73.5
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.9e-216 754.6 511 73.6
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 6.5e-216 754.2 510 73.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-215 753.4 510 72.2
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.1e-215 753.4 514 73.3
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-215 753.1 510 73.7
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-215 753.1 510 73.7
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.5e-215 752.3 514 72.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-215 751.5 510 73.5
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.2e-215 751.5 510 73.7
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 5.5e-215 751.1 513 72.5
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 5.5e-215 751.1 513 72.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.1e-215 750.7 509 75.8
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.3e-215 750.4 509 75.8
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.6e-214 749.6 508 74.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.0e-213 746.9 510 72.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.5e-212 742.3 514 72.0
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 7.4e-212 740.7 509 71.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.3e-211 740.0 507 72.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.5e-209 733.0 511 70.6
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.6e-209 732.3 452 80.3
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 5.9e-209 731.1 510 71.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.0e-208 730.3 490 74.3
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.7e-208 729.6 516 70.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.2e-208 729.2 535 72.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.8e-208 728.4 567 67.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 8.5e-208 727.2 508 71.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-207 726.9 503 72.2
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.2e-207 725.3 503 72.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.2e-207 724.9 508 70.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.2e-206 723.4 512 68.2
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.7e-205 717.6 493 77.9
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.3e-204 715.3 462 75.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 3.7e-203 711.8 588 63.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.3e-203 711.1 507 70.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.6e-198 696.4 511 68.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-197 693.3 500 69.8
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.3e-196 688.7 473 73.8
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 6.3e-195 684.5 514 67.7
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-194 682.9 513 68.8
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.4e-194 682.6 511 67.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.2e-193 680.2 450 75.1
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.0e-193 679.5 512 68.2
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 4.5e-193 678.3 531 67.0
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 5.9e-193 677.9 511 65.0
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.8e-192 675.2 452 73.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.9e-191 672.9 512 67.6
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.2e-191 671.8 502 67.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.7e-190 668.3 528 65.3
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 3.9e-189 665.2 512 66.0
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.4e-188 661.8 503 67.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 4.4e-180 635.2 510 63.9
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-173 614.0 404 73.3
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.3e-173 612.8 404 74.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.2e-161 573.9 664 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 4.0e-157 558.9 533 54.0
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.2e-150 537.3 542 52.0
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.9e-146 523.5 453 62.0
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.2e-142 508.4 417 60.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.5e-135 486.5 339 71.4
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.6e-134 483.8 510 52.7
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.6e-121 440.7 273 77.3
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.4e-117 426.8 271 79.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.0e-108 397.1 279 69.5
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-92 344.4 212 76.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.3e-87 326.6 266 61.3
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 7.4e-87 325.5 243 68.3
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.2e-83 313.9 219 72.6
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.8e-80 304.3 243 61.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 7.0e-77 292.4 504 40.7
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.4e-61 240.7 512 34.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.7e-57 226.5 396 34.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.4e-45 188.3 135 66.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 2.8e-41 174.1 106 79.2
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.7e-41 173.3 121 71.1
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.7e-36 157.5 114 64.0
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.8e-36 156.0 86 80.2
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.3e-35 154.5 210 40.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-30 138.7 247 38.9
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.7e-30 137.1 247 38.5
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 4.1e-29 133.7 67 91.0
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.9e-22 110.9 63 85.7
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-17 95.5 184 28.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 2.6e-15 87.8 113 48.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.7e-14 85.1 73 60.3
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 5.4e-13 80.1 61 68.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.3e-10 70.9 147 33.3
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-08 65.9 36 83.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 4.0e-08 63.9 87 43.7
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 5.3e-08 63.5 125 29.6
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.9e-08 63.2 105 43.8
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.2e-07 62.4 74 43.2
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.0e-07 61.6 36 75.0


User provided reference genes

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