Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 8.5e-69 263.5 125 100.0
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 4.1e-47 191.4 130 73.8
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 8.5e-45 183.7 100 90.0
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 1.1e-44 183.3 130 70.0
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.9e-44 182.6 130 70.0
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 4.2e-44 181.4 130 69.2
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 4.2e-44 181.4 130 69.2
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 5.5e-44 181.0 130 69.2
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 7.2e-44 180.6 130 70.0
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.2e-43 179.9 130 68.5
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 1.6e-43 179.5 130 68.5
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 3.6e-43 178.3 130 68.5
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 4.7e-43 177.9 130 69.2
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 8.0e-43 177.2 130 68.5
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 1.0e-42 176.8 130 68.5
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 3.0e-42 175.3 130 67.7
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 3.0e-42 175.3 130 66.9
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 4.0e-42 174.9 130 67.7
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 4.0e-42 174.9 130 68.5
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 8.8e-42 173.7 130 66.2
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 8.8e-42 173.7 130 67.7
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 1.2e-41 173.3 130 66.9
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 2.0e-41 172.6 130 67.7
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 2.6e-41 172.2 130 66.2
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 4.4e-41 171.4 130 68.5
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 5.7e-41 171.0 130 65.4
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 5.7e-41 171.0 130 66.9
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 5.7e-41 171.0 130 66.9
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 7.5e-41 170.6 130 66.2
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 9.8e-41 170.2 130 66.2
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 1.3e-40 169.9 130 66.2
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.3e-40 169.9 128 67.2
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.7e-40 169.5 128 67.2
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 2.8e-40 168.7 130 64.6
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 4.8e-40 167.9 130 66.2
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 4.8e-40 167.9 130 65.4
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 8.3e-40 167.2 130 65.4
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 1.1e-39 166.8 130 64.6
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 1.1e-39 166.8 130 64.6
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.4e-39 166.4 130 63.8
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 1.4e-39 166.4 130 64.6
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 2.4e-39 165.6 130 63.8
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 3.1e-39 165.2 128 65.6
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 4.1e-39 164.9 130 63.8
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 9.1e-39 163.7 131 66.4
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 2.7e-38 162.2 127 64.6
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 2.7e-38 162.2 130 64.6
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 4.5e-38 161.4 133 66.9
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 5.9e-38 161.0 132 64.4
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 5.9e-38 161.0 132 64.4
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 5.9e-38 161.0 132 64.4
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 5.9e-38 161.0 132 64.4
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 5.9e-38 161.0 130 63.1
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 1.3e-37 159.8 130 63.8
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 1.3e-37 159.8 130 63.8
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.9e-37 158.7 132 63.6
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 5.0e-37 157.9 130 64.6
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 5.0e-37 157.9 132 63.6
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 5.0e-37 157.9 130 60.8
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 6.5e-37 157.5 130 60.8
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 8.6e-37 157.1 133 65.4
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 2.5e-36 155.6 130 63.1
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 1.2e-35 153.3 128 62.5
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 2.8e-35 152.1 128 60.9
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 4.7e-35 151.4 130 59.2
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 6.1e-35 151.0 128 60.9
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 8.0e-35 150.6 128 60.9
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 8.0e-35 150.6 128 60.9
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 8.0e-35 150.6 128 60.9
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 8.0e-35 150.6 128 60.9
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 1.0e-34 150.2 128 60.9
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 1.8e-34 149.4 128 60.2
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 1.8e-34 149.4 128 60.2
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 2.3e-34 149.1 128 59.4
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 5.2e-34 147.9 128 59.4
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 6.8e-34 147.5 128 59.4
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 6.8e-34 147.5 128 59.4
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 1.5e-33 146.4 128 58.6
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 1.5e-33 146.4 128 58.6
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 1.5e-33 146.4 128 58.6
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 2.6e-33 145.6 85 80.0
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 2.6e-33 145.6 128 59.4
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 4.4e-33 144.8 128 59.4
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 4.4e-33 144.8 85 80.0
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 9.8e-33 143.7 135 57.8
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.3e-32 143.3 135 56.3
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 8.3e-32 140.6 89 74.2
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 5.4e-31 137.9 90 71.1
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 2.0e-30 136.0 85 81.2
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 4.5e-30 134.8 100 69.0
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 7.8e-30 134.0 90 74.4
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 1.0e-29 133.7 128 55.5
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 1.3e-29 133.3 91 70.3
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 3.8e-29 131.7 85 70.6
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 6.6e-29 131.0 85 75.3
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 1.9e-28 129.4 89 70.8
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 1.9e-28 129.4 101 65.3
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 3.3e-28 128.6 91 68.1
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 1.2e-27 126.7 85 71.8
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 1.2e-27 126.7 129 51.2
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 8.0e-27 124.0 85 70.6
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 2.0e-25 119.4 74 77.0
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 2.6e-25 119.0 100 63.0
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 2.6e-25 119.0 100 63.0
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.6e-25 119.0 105 59.0
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 3.4e-25 118.6 121 53.7
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 3.4e-25 118.6 121 53.7
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 2.2e-24 115.9 129 48.8
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 1.4e-23 113.2 87 63.2
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.9e-23 112.8 70 77.1
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 5.4e-23 111.3 100 60.0
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 1.6e-22 109.8 100 57.0
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 5.0e-21 104.8 98 57.1
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 2.5e-20 102.4 111 54.1
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 1.4e-18 96.7 89 55.1
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.8e-18 96.3 51 80.4
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 4.4e-17 91.7 123 43.9
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 3.7e-16 88.6 122 40.2
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 5.4e-15 84.7 74 58.1
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 1.6e-11 73.2 127 33.9
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 1.5e-09 66.6 150 34.0
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 2.2e-08 62.8 30 90.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 3.2e-07 58.9 30 86.7
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 4.6e-06 55.1 85 36.5
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 7.8e-06 54.3 25 92.0


User provided reference genes

Program Settings