Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 3.5e-143 511.5 248 100.0
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 3.8e-105 385.2 220 87.7
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 5.0e-97 358.2 217 83.9
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 2.6e-93 345.9 219 80.4
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.2e-90 337.0 220 78.2
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 3.5e-90 335.5 225 77.8
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 1.7e-89 333.2 223 77.6
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 2.9e-89 332.4 223 77.1
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 8.6e-89 330.9 225 76.0
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 1.2e-87 327.0 215 78.1
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 4.7e-87 325.1 225 75.1
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.3e-86 322.8 211 79.1
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 3.1e-86 322.4 250 69.6
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 3.1e-86 322.4 224 75.0
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 2.0e-85 319.7 208 78.8
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.6e-85 319.3 211 77.7
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 3.4e-85 318.9 206 77.2
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 1.7e-84 316.6 212 78.3
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 1.7e-84 316.6 214 75.2
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 2.9e-84 315.8 242 69.0
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 4.9e-84 315.1 187 82.9
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 8.3e-84 314.3 242 68.6
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 1.1e-83 313.9 242 67.4
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 1.4e-83 313.5 216 76.4
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 1.9e-83 313.2 185 82.7
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 7.0e-83 311.2 173 87.3
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 9.2e-83 310.8 208 75.0
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 9.2e-83 310.8 230 70.4
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 1.2e-82 310.5 218 73.4
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 2.0e-82 309.7 226 72.1
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 2.7e-82 309.3 180 84.4
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 4.6e-82 308.5 189 82.0
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 6.0e-82 308.1 220 72.7
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 7.8e-82 307.8 189 80.4
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 1.0e-81 307.4 185 81.1
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.0e-81 307.4 211 75.8
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 1.3e-81 307.0 179 84.9
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 1.7e-81 306.6 219 72.6
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 3.9e-81 305.4 185 82.2
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 3.9e-81 305.4 216 74.5
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 5.0e-81 305.1 220 71.8
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 6.6e-81 304.7 173 85.5
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 6.6e-81 304.7 185 81.1
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 8.6e-81 304.3 196 78.6
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.1e-80 303.9 221 72.4
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 1.1e-80 303.9 179 83.8
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.1e-80 303.9 179 80.4
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 1.5e-80 303.5 192 80.2
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.5e-80 303.5 179 83.8
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 2.5e-80 302.8 211 72.5
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 5.6e-80 301.6 197 76.6
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 7.3e-80 301.2 221 71.5
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 9.5e-80 300.8 184 78.8
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 9.5e-80 300.8 184 78.8
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.2e-79 300.4 199 75.4
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 1.6e-79 300.1 184 80.4
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 3.6e-79 298.9 187 79.1
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 3.6e-79 298.9 219 69.9
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 6.2e-79 298.1 182 79.1
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 6.2e-79 298.1 224 68.8
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 8.0e-79 297.7 185 78.4
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 1.1e-78 297.4 200 74.5
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 1.1e-78 297.4 176 81.8
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.1e-78 297.4 208 73.1
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 1.1e-78 297.4 319 54.9
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 1.8e-78 296.6 213 71.8
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 2.3e-78 296.2 202 73.3
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 5.2e-78 295.0 186 78.0
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 6.8e-78 294.7 188 77.7
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 1.2e-77 293.9 212 72.6
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 1.5e-77 293.5 185 79.5
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.5e-77 293.5 172 82.6
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 2.0e-77 293.1 179 80.4
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 4.4e-77 292.0 183 79.8
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 9.8e-77 290.8 166 86.1
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 9.8e-77 290.8 154 87.7
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 1.3e-76 290.4 207 70.0
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 1.3e-76 290.4 156 88.5
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 2.9e-76 289.3 197 72.6
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 6.4e-76 288.1 174 79.3
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 8.3e-76 287.7 227 67.0
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 2.4e-75 286.2 223 68.2
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 3.2e-75 285.8 219 67.1
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 5.4e-75 285.0 190 71.6
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 7.0e-75 284.6 156 84.6
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 7.0e-75 284.6 229 65.5
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 7.0e-75 284.6 210 68.6
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 9.2e-75 284.3 195 77.9
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 7.8e-74 281.2 183 75.4
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.5e-72 276.9 184 71.7
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 4.0e-70 268.9 170 73.5
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 2.7e-66 256.1 170 70.0
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 3.5e-66 255.8 234 58.5
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 1.9e-64 250.0 143 79.0
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 1.1e-62 244.2 166 71.7
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 8.4e-60 234.6 118 90.7
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.9e-59 233.4 157 70.7
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.5e-56 223.8 119 83.2
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 9.6e-56 221.1 143 68.5
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 2.1e-55 219.9 161 65.8
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.9e-51 206.8 119 77.3
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 2.3e-49 199.9 178 57.3
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 2.8e-47 193.0 204 49.5
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 1.1e-43 181.0 94 88.3
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 2.4e-43 179.9 118 69.5
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 1.6e-42 177.2 115 75.7
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 1.6e-42 177.2 115 75.7
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 7.9e-42 174.9 191 53.4
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 2.6e-29 133.3 89 74.2
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 3.5e-26 122.9 68 83.8
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 2.2e-23 113.6 69 76.8
Haze_20550 Corylus avellana HOM05D006544 ORTHO05D008757 5.3e-22 109.0 62 93.5
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 7.7e-21 105.1 174 33.9
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 1.0e-17 94.7 126 34.1
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 2.2e-15 87.0 112 51.8
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 2.2e-15 87.0 63 68.3
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 3.7e-15 86.3 47 80.9
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 1.2e-13 81.3 128 32.0
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 8.5e-12 75.1 65 67.7
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 7.4e-08 62.0 126 26.2
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 7.4e-08 62.0 121 28.1
MD04G1093800 Malus domestica HOM05D006544 ORTHO05D247365 5.3e-06 55.8 35 71.4


User provided reference genes

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