Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 3.7e-96 354.8 166 100.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 2.0e-49 199.5 100 87.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 4.4e-49 198.4 100 87.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 7.6e-49 197.6 100 85.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 9.9e-49 197.2 99 84.8
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 1.7e-48 196.4 100 84.0
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 2.2e-48 196.1 100 85.0
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 3.8e-48 195.3 100 86.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 3.8e-48 195.3 100 84.0
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 8.4e-48 194.1 100 85.0
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 1.4e-47 193.4 100 83.0
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 1.9e-47 193.0 106 79.2
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 2.4e-47 192.6 100 83.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 2.4e-47 192.6 100 83.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 2.4e-47 192.6 100 83.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 4.2e-47 191.8 100 84.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 7.1e-47 191.0 98 85.7
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 9.3e-47 190.7 100 83.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 9.3e-47 190.7 100 83.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 2.1e-46 189.5 98 84.7
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 2.7e-46 189.1 100 80.0
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 6.0e-46 188.0 100 80.0
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 7.8e-46 187.6 98 83.7
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 7.8e-46 187.6 100 81.0
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 1.3e-45 186.8 100 83.0
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 2.3e-45 186.0 100 79.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 3.0e-45 185.7 100 80.0
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 3.0e-45 185.7 100 80.0
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 3.9e-45 185.3 106 76.4
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 1.5e-44 183.3 100 82.0
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 1.5e-44 183.3 97 78.4
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 1.9e-44 183.0 100 81.0
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 1.9e-44 183.0 100 78.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 2.5e-44 182.6 100 78.0
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 4.3e-44 181.8 98 80.6
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 9.6e-44 180.6 100 79.0
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 9.6e-44 180.6 100 79.0
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 1.3e-43 180.3 100 79.0
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 2.1e-43 179.5 100 78.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 2.1e-43 179.5 88 88.6
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 2.1e-43 179.5 100 79.0
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 2.8e-43 179.1 94 83.0
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 3.6e-43 178.7 100 77.0
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 6.2e-43 177.9 100 76.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 6.2e-43 177.9 100 76.0
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 1.1e-42 177.2 100 75.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 1.4e-42 176.8 100 78.0
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 1.8e-42 176.4 100 78.0
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 3.1e-42 175.6 100 80.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 3.1e-42 175.6 100 77.0
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 5.3e-42 174.9 100 80.0
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 6.9e-42 174.5 85 88.2
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 1.2e-41 173.7 107 74.8
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 1.2e-41 173.7 100 77.0
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 1.5e-41 173.3 100 79.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 1.5e-41 173.3 100 79.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 1.5e-41 173.3 100 77.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 1.5e-41 173.3 100 74.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 1.5e-41 173.3 100 74.0
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 2.6e-41 172.6 100 79.0
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 5.8e-41 171.4 100 78.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 5.8e-41 171.4 100 78.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 5.8e-41 171.4 100 78.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 5.8e-41 171.4 100 78.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 5.8e-41 171.4 100 78.0
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 7.6e-41 171.0 100 71.0
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 7.6e-41 171.0 100 78.0
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 9.9e-41 170.6 100 73.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 9.9e-41 170.6 100 76.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 1.3e-40 170.2 98 74.5
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 2.9e-40 169.1 98 71.4
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 3.8e-40 168.7 98 70.4
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 3.8e-40 168.7 100 74.0
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 2.4e-39 166.0 100 71.0
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 4.2e-39 165.2 98 71.4
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 5.4e-39 164.9 100 74.0
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 5.4e-39 164.9 100 68.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 4.6e-38 161.8 100 67.0
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 6.0e-38 161.4 100 67.0
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 6.7e-37 157.9 100 69.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 6.7e-37 157.9 100 69.0
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 1.3e-35 153.7 134 54.5
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 4.8e-35 151.8 99 66.7
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 2.4e-34 149.4 100 69.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 2.4e-34 149.4 100 69.0
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 6.9e-34 147.9 100 65.0
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 1.2e-33 147.1 100 64.0
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 3.4e-33 145.6 99 62.6
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 4.9e-32 141.7 88 73.9
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 1.9e-31 139.8 99 63.6
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 3.5e-30 135.6 114 57.0
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 1.8e-29 133.3 70 81.4
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 3.0e-29 132.5 170 42.9
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 4.0e-26 122.1 101 54.5
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 4.2e-23 112.1 101 51.5
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 2.3e-21 106.3 58 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 8.2e-19 97.8 102 48.0
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 1.9e-15 86.7 100 41.0
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 5.1e-13 78.6 41 82.9
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 4.8e-11 72.0 31 96.8
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 4.5e-09 65.5 40 70.0
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 8.5e-08 61.2 99 33.3
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 1.1e-07 60.8 78 35.9
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 3.2e-07 59.3 78 33.3


User provided reference genes

Program Settings