Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.0e-163 580.1 310 100.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.5e-143 513.1 309 87.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 3.0e-139 498.8 310 85.5
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.4e-135 485.3 312 83.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.3e-134 483.4 262 97.3
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.1e-133 480.3 310 81.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 7.1e-133 477.6 310 81.3
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 3.5e-132 475.3 310 81.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.0e-132 474.6 318 78.9
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.3e-131 472.6 318 78.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.0e-131 472.2 310 79.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.9e-131 471.9 310 80.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.1e-131 471.5 310 81.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 6.6e-131 471.1 310 80.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 6.6e-131 471.1 310 80.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 8.7e-131 470.7 310 79.7
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.7e-131 470.7 310 80.6
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-130 470.3 310 79.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.5e-130 469.9 310 78.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 80.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.5e-130 469.2 317 77.6
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.5e-130 469.2 317 77.6
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.3e-130 468.8 310 79.0
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 4.3e-130 468.4 310 78.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.8e-129 465.7 310 79.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 78.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 79.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.4e-128 462.6 310 79.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 5.3e-128 461.5 310 78.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 5.3e-128 461.5 310 79.0
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 5.3e-128 461.5 310 79.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.9e-128 461.1 310 79.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 9.0e-128 460.7 310 78.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 9.0e-128 460.7 318 77.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 78.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.5e-127 459.9 318 76.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 77.7
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 4.5e-127 458.4 310 78.1
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 7.6e-127 457.6 315 77.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 7.6e-127 457.6 310 77.4
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 9.9e-127 457.2 319 75.5
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.3e-126 456.8 310 77.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 79.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.9e-126 454.9 310 78.4
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 75.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-125 453.4 318 77.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 77.1
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.3e-125 450.7 318 74.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 76.8
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.7e-124 449.1 318 73.0
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.7e-124 449.1 362 69.3
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.7e-124 449.1 318 73.9
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 4.6e-124 448.4 310 77.1
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 6.0e-124 448.0 316 74.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.3e-123 446.8 318 73.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.3e-123 446.8 311 76.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.3e-123 446.8 311 76.5
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.3e-123 446.8 318 73.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.0e-123 445.7 310 75.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.1e-123 444.9 309 75.7
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 76.1
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 5.1e-123 444.9 318 73.3
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 8.7e-123 444.1 318 73.0
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.5e-122 442.6 310 72.6
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.3e-122 441.8 318 73.0
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 74.8
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.6e-121 439.9 319 72.7
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.7e-121 438.7 310 71.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.8e-121 438.3 310 74.5
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 6.2e-121 438.0 319 73.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 8.1e-121 437.6 318 71.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 8.1e-121 437.6 318 71.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.4e-120 436.8 311 74.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 74.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 73.2
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.6e-119 432.6 310 73.9
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.6e-119 432.6 311 74.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 4.5e-119 431.8 318 71.7
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.6e-119 431.0 345 68.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 4.9e-118 428.3 310 72.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 4.2e-117 425.2 310 73.5
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 9.3e-117 424.1 312 72.1
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 9.3e-117 424.1 285 79.3
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.1e-116 422.9 311 72.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 74.8
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.5e-116 422.2 307 72.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.3e-115 420.2 318 71.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 3.0e-115 419.1 310 70.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.1e-114 417.2 312 72.1
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-114 417.2 318 70.8
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.5e-114 416.0 310 72.3
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 6.2e-113 411.4 310 70.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.0e-112 408.7 278 78.4
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.5e-111 405.2 316 68.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.7e-110 403.3 297 73.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.2e-110 402.9 316 67.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.9e-110 402.5 316 67.7
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.9e-110 402.5 279 76.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.5e-109 399.4 294 72.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 5.5e-109 398.3 294 72.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.6e-108 396.7 294 71.8
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.5e-108 395.6 310 67.4
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-107 392.5 319 69.9
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.1e-106 390.6 321 65.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.7e-106 388.3 281 73.0
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.8e-104 383.3 312 65.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.8e-104 383.3 262 76.7
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.4e-104 382.9 286 71.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.5e-103 380.2 286 71.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.5e-103 380.2 277 72.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-100 370.5 256 77.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.0e-99 365.9 310 67.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.4e-98 361.3 256 74.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.8e-97 359.4 310 62.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.5e-95 353.6 310 64.5
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.9e-95 351.7 317 62.8
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.1e-93 347.4 262 67.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.1e-93 347.4 316 60.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-89 334.0 310 60.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.4e-87 325.9 228 75.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 5.9e-87 325.1 242 71.1
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 9.4e-85 317.8 221 75.6
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.2e-84 317.4 310 57.7
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.2e-77 292.4 740 33.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.2e-75 285.4 391 49.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.1e-69 267.7 315 49.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.4e-66 256.1 315 47.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.3e-65 254.2 312 49.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.9e-61 240.4 178 75.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.6e-58 229.9 292 46.2
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.5e-53 213.4 185 66.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.2e-50 204.5 150 77.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.9e-49 199.9 265 50.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 4.6e-47 192.6 157 69.4
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.5e-45 187.6 121 84.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 5.8e-42 175.6 143 68.5
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.2e-41 173.7 120 80.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-40 171.0 244 46.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.2e-34 151.4 260 45.4
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.6e-34 150.2 121 61.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.9e-32 144.1 310 34.8
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 7.1e-32 142.1 91 80.2
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.6e-28 131.0 133 61.7
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-28 129.8 110 63.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.4e-26 123.2 87 79.3
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.4e-26 122.9 99 67.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.8e-26 122.5 142 59.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 9.9e-26 121.7 93 67.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.9e-22 109.8 89 60.7
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.4e-17 92.0 58 75.9
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-14 84.7 62 72.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.5e-13 81.3 394 24.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.5e-13 80.5 84 54.8
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 2.7e-07 60.5 90 41.1
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 3.5e-07 60.1 42 71.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.0e-06 57.0 126 34.9


User provided reference genes

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