Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017523 Carpinus fangiana HOM05D004125 ORTHO05D004933 6.2e-137 490.7 238 100.0
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 2.4e-72 276.2 171 82.5
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 1.5e-58 230.3 171 71.9
CiPaw.10G136300 Carya illinoinensis HOM05D004125 ORTHO05D004933 2.0e-50 203.4 173 64.2
CiPaw.10G136500 Carya illinoinensis HOM05D004125 ORTHO05D004933 2.0e-50 203.4 173 64.2
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 1.7e-49 200.3 177 61.6
vmacro08723 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 3.9e-46 189.1 252 47.2
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 8.6e-46 188.0 174 60.3
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 8.6e-46 188.0 285 43.2
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 1.1e-45 187.6 173 60.1
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 1.9e-45 186.8 174 59.8
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 9.5e-45 184.5 168 56.0
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.2e-44 184.1 168 56.0
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.2e-44 184.1 168 56.0
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 2.8e-44 183.0 169 58.0
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 3.6e-44 182.6 172 58.7
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 1.8e-43 180.3 167 61.7
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 3.1e-43 179.5 178 57.9
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 3.1e-43 179.5 178 57.9
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 4.0e-43 179.1 165 57.6
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 5.2e-43 178.7 167 57.5
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 6.8e-43 178.3 156 59.0
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 2.6e-42 176.4 160 60.0
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 5.8e-42 175.3 167 56.3
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 2.9e-41 172.9 164 57.3
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 4.9e-41 172.2 168 56.0
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 4.9e-41 172.2 164 56.7
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 8.3e-41 171.4 162 58.0
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.1e-40 171.0 164 56.7
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 1.4e-40 170.6 162 56.8
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 1.4e-40 170.6 169 57.4
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 1.9e-40 170.2 165 53.9
Dinv37266 Davidia involucrata HOM05D004125 ORTHO05D004933 3.2e-40 169.5 162 57.4
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 4.1e-40 169.1 164 58.5
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 5.4e-40 168.7 178 56.2
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 1.2e-39 167.5 165 54.5
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 1.2e-39 167.5 169 54.4
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 1.6e-39 167.2 164 57.9
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 1.6e-39 167.2 167 53.3
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 2.7e-39 166.4 167 53.9
Gohir.A11G324600 Gossypium hirsutum HOM05D004125 ORTHO05D004933 2.7e-39 166.4 170 54.1
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 2.7e-39 166.4 171 53.2
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 3.5e-39 166.0 165 55.2
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 4.6e-39 165.6 165 53.3
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 4.6e-39 165.6 166 56.6
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 7.8e-39 164.9 165 54.5
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 7.8e-39 164.9 160 55.0
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 1.0e-38 164.5 163 55.8
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 1.0e-38 164.5 168 55.4
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 1.3e-38 164.1 162 57.4
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 1.7e-38 163.7 165 53.9
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 1.7e-38 163.7 165 52.7
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 2.3e-38 163.3 167 53.3
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 3.0e-38 162.9 165 54.5
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 3.0e-38 162.9 168 56.0
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 3.0e-38 162.9 162 54.9
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 3.0e-38 162.9 161 57.8
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 3.9e-38 162.5 165 53.3
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 3.9e-38 162.5 165 53.3
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 5.1e-38 162.2 185 51.9
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 6.6e-38 161.8 135 60.7
FAN05G0570 Fragaria x ananassa HOM05D004125 ORTHO05D004933 6.6e-38 161.8 172 54.1
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 8.6e-38 161.4 176 52.8
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 1.1e-37 161.0 169 55.6
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.1e-37 161.0 165 57.0
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 1.5e-37 160.6 170 54.7
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 1.5e-37 160.6 177 51.4
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 1.9e-37 160.2 165 53.3
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 2.5e-37 159.8 177 50.3
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 3.3e-37 159.5 163 52.8
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 3.3e-37 159.5 163 52.8
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.3e-37 159.5 170 54.1
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 4.3e-37 159.1 165 52.1
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 4.3e-37 159.1 178 50.0
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 7.3e-37 158.3 171 53.2
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 7.3e-37 158.3 177 50.8
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 1.2e-36 157.5 114 65.8
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 1.6e-36 157.1 163 52.1
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 1.6e-36 157.1 163 52.1
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 1.6e-36 157.1 176 51.1
arahy.Tifrunner.gnm1.ann1.DS9KFU Arachis hypogaea HOM05D004125 ORTHO05D004933 3.6e-36 156.0 113 65.5
arahy.Tifrunner.gnm1.ann1.SDZN59 Arachis hypogaea HOM05D004125 ORTHO05D004933 3.6e-36 156.0 113 65.5
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.6e-36 156.0 161 52.2
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 3.6e-36 156.0 161 54.7
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 4.7e-36 155.6 162 52.5
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 4.7e-36 155.6 160 55.0
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 4.7e-36 155.6 162 51.9
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 4.7e-36 155.6 168 53.6
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 8.1e-36 154.8 172 52.9
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 8.1e-36 154.8 161 55.3
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 8.1e-36 154.8 175 52.0
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 1.1e-35 154.5 163 51.5
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 1.1e-35 154.5 163 54.0
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 1.4e-35 154.1 165 53.3
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 1.8e-35 153.7 165 56.4
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 2.4e-35 153.3 185 48.1
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 2.4e-35 153.3 162 50.6
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.1e-35 152.9 165 55.2
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 4.0e-35 152.5 165 52.7
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 4.0e-35 152.5 167 54.5
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 5.2e-35 152.1 161 51.6
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 5.2e-35 152.1 162 50.0
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 6.8e-35 151.8 166 49.4
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 6.8e-35 151.8 166 49.4
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 8.9e-35 151.4 130 58.5
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 1.5e-34 150.6 161 53.4
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.5e-34 150.6 161 51.6
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 2.0e-34 150.2 135 58.5
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 2.6e-34 149.8 162 49.4
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 3.4e-34 149.4 162 53.1
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 4.4e-34 149.1 114 62.3
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 4.4e-34 149.1 112 64.3
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 7.6e-34 148.3 160 51.2
Oeu014972.1 Olea europaea HOM05D004125 ORTHO05D004933 7.6e-34 148.3 114 63.2
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 7.6e-34 148.3 161 52.2
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 1.3e-33 147.5 160 52.5
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 1.3e-33 147.5 164 51.8
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 1.3e-33 147.5 114 60.5
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 1.3e-33 147.5 169 47.9
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.3e-33 147.5 169 50.9
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 1.7e-33 147.1 160 50.6
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 3.8e-33 146.0 173 48.6
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 3.8e-33 146.0 114 60.5
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 1.1e-32 144.4 153 51.0
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 1.4e-32 144.1 114 60.5
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 1.4e-32 144.1 170 52.4
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 1.9e-32 143.7 113 61.9
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 1.9e-32 143.7 161 52.2
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 3.2e-32 142.9 164 51.8
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 4.2e-32 142.5 174 50.6
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 4.2e-32 142.5 118 59.3
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 5.4e-32 142.1 162 52.5
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 9.2e-32 141.4 172 48.3
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 1.2e-31 141.0 113 61.1
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 2.7e-31 139.8 161 50.9
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 3.5e-31 139.4 118 56.8
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 6.0e-31 138.7 183 44.8
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 2.3e-30 136.7 168 47.0
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 1.2e-28 131.0 161 45.3
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 4.7e-28 129.0 152 48.0
Gorai.007G374200 Gossypium raimondii HOM05D004125 ORTHO05D004933 6.2e-28 128.6 103 62.1
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 8.1e-28 128.3 120 57.5
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 5.3e-27 125.6 137 45.3
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 2.6e-26 123.2 153 47.1
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 3.4e-26 122.9 165 41.8
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 2.2e-25 120.2 166 43.4
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 2.9e-25 119.8 111 50.5
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.9e-25 119.0 137 48.9
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.9e-25 119.0 137 48.9
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 8.4e-25 118.2 89 65.2
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 1.6e-23 114.0 93 60.2
Gohir.D11G343850 Gossypium hirsutum HOM05D004125 ORTHO05D004933 2.1e-23 113.6 81 65.4
Pp3c2_28280 Physcomitrium patens HOM05D004125 ORTHO05D004933 1.6e-20 104.0 110 47.3
AagrBONN_evm.TU.Sc2ySwM_369.209 Anthoceros agrestis HOM05D004125 ORTHO05D004933 8.1e-20 101.7 160 41.2
Mapoly0052s0073 Marchantia polymorpha HOM05D004125 ORTHO05D004933 6.9e-19 98.6 160 39.4
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 1.3e-17 94.4 68 61.8
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 3.5e-15 86.3 99 46.5
Pp3c19_5790 Physcomitrium patens HOM05D004125 ORTHO05D004933 4.6e-15 85.9 114 44.7
Pp3c21_3760 Physcomitrium patens HOM05D004125 ORTHO05D004933 1.5e-13 80.9 113 44.2
MBI15_g00075_MAGBIO Magnolia biondii HOM05D004125 ORTHO05D004933 9.0e-11 71.6 64 59.4
Lj2A109G39 Lonicera japonica HOM05D004125 ORTHO05D004933 3.8e-09 66.2 46 67.4
VMungo1080G0194 Vigna mungo HOM05D004125 ORTHO05D435946 5.5e-08 62.4 57 56.1


User provided reference genes

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