Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 9.2e-243 843.2 445 100.0
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 4.5e-205 718.0 450 87.8
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 3.2e-126 456.1 453 63.8
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 1.2e-122 444.1 449 63.3
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 1.4e-94 350.9 447 52.8
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 1.8e-89 334.0 440 51.1
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 5.3e-89 332.4 443 51.5
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 6.9e-89 332.0 453 49.4
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 2.6e-88 330.1 475 50.1
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 1.6e-85 320.9 444 50.5
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 2.1e-85 320.5 450 50.0
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 3.5e-85 319.7 443 49.7
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 1.0e-84 318.2 449 51.9
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 1.6e-82 310.8 407 53.1
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 1.6e-82 310.8 497 47.1
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 1.1e-81 308.1 448 48.2
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 6.9e-81 305.4 439 48.3
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 2.6e-80 303.5 439 48.1
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 4.5e-80 302.8 474 45.6
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 7.7e-80 302.0 467 45.6
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 1.7e-79 300.8 458 46.1
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.9e-78 297.4 439 48.1
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 7.2e-78 295.4 445 48.5
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 7.2e-78 295.4 440 46.6
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 7.9e-77 292.0 507 44.2
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 5.3e-73 279.3 445 47.6
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 5.9e-72 275.8 418 46.7
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 2.2e-71 273.9 431 47.1
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.9e-71 273.5 473 44.0
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.4e-68 264.6 440 46.1
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 4.4e-67 259.6 406 46.6
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 9.7e-67 258.5 418 45.5
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.1e-65 255.0 456 44.7
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 4.1e-65 253.1 440 45.2
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-64 251.1 417 45.3
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.5e-64 250.0 464 43.3
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 5.9e-64 249.2 418 45.5
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 7.7e-64 248.8 487 40.5
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-63 247.7 438 44.7
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 6.5e-63 245.7 488 39.5
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-62 245.0 405 45.9
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.9e-62 244.2 416 44.2
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 1.6e-61 241.1 439 43.5
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 4.7e-61 239.6 473 40.0
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 6.1e-61 239.2 450 42.4
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.0e-60 238.4 481 39.9
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 1.0e-60 238.4 504 39.9
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 1.0e-60 238.4 497 40.8
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 3.9e-60 236.5 504 38.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.5e-59 234.6 438 42.9
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 3.3e-59 233.4 421 43.5
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 7.4e-59 232.3 420 42.9
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.3e-58 231.5 439 41.0
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 4.8e-58 229.6 453 39.5
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.1e-57 228.4 308 51.0
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 4.1e-57 226.5 438 41.1
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 7.0e-57 225.7 454 41.9
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 1.2e-56 224.9 448 40.6
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 2.0e-56 224.2 441 40.8
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 5.0e-55 219.5 390 44.6
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.4e-52 211.5 462 39.4
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 2.3e-52 210.7 442 40.0
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 2.6e-51 207.2 467 40.5
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 7.5e-51 205.7 459 41.4
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 8.3e-50 202.2 447 39.6
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 8.3e-50 202.2 273 48.7
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 5.4e-49 199.5 319 45.1
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 1.3e-47 194.9 440 38.2
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 3.8e-47 193.4 454 39.0
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 1.5e-46 191.4 452 37.2
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 9.4e-46 188.7 457 38.5
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 1.6e-45 188.0 251 49.8
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 3.6e-45 186.8 457 37.6
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 5.2e-44 183.0 329 42.9
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 8.8e-44 182.2 460 38.7
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 3.4e-43 180.3 238 52.9
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 5.7e-43 179.5 523 36.1
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 5.7e-43 179.5 408 38.0
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 2.2e-42 177.6 240 48.8
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 2.2e-42 177.6 454 36.6
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 1.8e-41 174.5 265 45.3
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 5.4e-41 172.9 455 38.2
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 2.0e-40 171.0 451 37.7
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-39 167.9 296 45.3
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 1.1e-38 165.2 345 41.2
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 3.6e-37 160.2 404 35.1
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 8.0e-37 159.1 308 40.9
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 2.3e-36 157.5 456 35.7
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 2.0e-35 154.5 314 40.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 7.5e-27 125.9 94 70.2
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 6.4e-26 122.9 373 35.4
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 9.2e-25 119.0 137 51.8
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 1.7e-23 114.8 295 36.3
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 4.4e-19 100.1 267 34.8
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 2.6e-11 74.3 130 42.3
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 4.4e-11 73.6 73 52.1
Oeu018558.1 Olea europaea HOM05D007360 ORTHO05D008235 1.1e-09 68.9 108 43.5
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 1.4e-09 68.6 263 28.9
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 7.1e-09 66.2 53 66.0
Oeu063812.1 Olea europaea HOM05D007360 ORTHO05D008235 2.1e-08 64.7 108 43.5
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.5e-08 63.9 60 58.3
MD04G1102800 Malus domestica HOM05D007360 ORTHO05D008235 4.6e-08 63.5 169 39.6
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.0e-08 63.2 61 55.7
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.0e-08 63.2 61 55.7
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 7.8e-08 62.8 58 58.6
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 1.3e-07 62.0 299 25.1
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 1.7e-07 61.6 303 27.1
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 2.3e-07 61.2 304 26.0
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 3.0e-07 60.8 295 26.1
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 3.9e-07 60.5 348 26.4
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 1.5e-06 58.5 266 26.7
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 2.5e-06 57.8 332 23.5
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 2.5e-06 57.8 248 29.0
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 3.3e-06 57.4 261 26.1
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 4.3e-06 57.0 240 27.5
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 9.6e-06 55.8 303 26.7


User provided reference genes

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