Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.7e-128 462.6 223 100.0
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.0e-121 439.1 223 96.0
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.7e-118 428.7 223 93.7
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.2e-99 364.0 223 79.4
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 1.1e-98 363.6 222 77.9
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.4e-98 362.5 223 79.4
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.2e-97 360.1 219 79.5
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.6e-97 359.0 223 77.1
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.6e-97 359.0 223 78.9
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 5.9e-97 357.8 222 77.9
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.7e-96 356.3 221 78.3
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 5.0e-96 354.8 221 78.3
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 5.0e-96 354.8 223 77.1
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 7.2e-95 350.9 219 77.6
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.0e-94 347.4 219 77.2
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.0e-93 347.1 223 74.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.8e-93 346.3 218 77.1
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 5.2e-93 344.7 219 77.2
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.2e-93 344.7 217 77.4
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.5e-92 343.2 217 76.5
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.3e-91 340.1 211 79.1
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.3e-91 340.1 220 75.5
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.7e-91 339.7 219 75.3
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.8e-91 339.0 220 75.9
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.7e-91 338.6 215 74.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 4.8e-91 338.2 219 75.3
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.8e-90 336.3 219 74.4
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 2.4e-90 335.9 223 73.5
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 2.4e-90 335.9 218 74.3
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 9.1e-90 334.0 223 74.4
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.2e-89 333.6 215 74.4
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.6e-89 333.2 215 74.0
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.6e-89 333.2 220 73.2
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.0e-89 332.8 218 75.7
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.7e-89 332.4 215 74.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 4.5e-89 331.6 213 74.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.5e-89 331.6 213 74.2
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-88 330.1 213 73.7
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 1.7e-88 329.7 217 72.8
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.9e-88 328.9 219 73.5
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 8.5e-88 327.4 219 73.1
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.5e-87 326.6 218 72.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 9.4e-87 323.9 214 72.9
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 9.4e-87 323.9 222 71.6
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 9.4e-87 323.9 222 71.6
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 9.4e-87 323.9 215 72.6
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.6e-86 323.2 215 74.4
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 2.7e-86 322.4 215 74.9
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 3.6e-86 322.0 213 73.7
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 8.0e-86 320.9 225 72.0
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 8.0e-86 320.9 215 74.4
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 8.0e-86 320.9 221 71.5
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.0e-85 320.5 217 70.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.4e-85 320.1 222 71.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.8e-85 319.7 216 71.8
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-85 319.7 219 73.1
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-85 319.7 219 73.1
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-85 319.7 219 73.1
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-85 319.7 219 73.1
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-85 319.7 219 73.1
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.8e-85 319.7 215 73.5
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.3e-85 319.3 217 72.4
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 2.3e-85 319.3 215 70.7
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.0e-85 318.9 224 70.5
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 8.8e-85 317.4 224 70.1
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.5e-84 316.6 220 71.8
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.5e-84 316.6 218 70.6
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.8e-83 312.4 216 69.4
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 4.8e-83 311.6 215 72.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.4e-82 310.1 220 69.5
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 2.4e-82 309.3 210 71.4
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 3.1e-82 308.9 220 70.0
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 5.9e-81 304.7 223 69.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 3.8e-80 302.0 217 70.0
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.5e-80 301.2 223 68.2
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 8.5e-80 300.8 217 69.6
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.2e-79 298.5 221 67.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 4.2e-79 298.5 215 66.5
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 3.6e-78 295.4 214 68.2
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 3.6e-78 295.4 212 69.3
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.0e-77 292.4 220 69.1
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 4.0e-77 292.0 223 66.4
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 5.2e-77 291.6 220 69.1
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.8e-77 291.2 216 68.1
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 8.8e-77 290.8 213 67.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.2e-76 290.4 220 67.3
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.2e-76 290.4 219 65.8
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.4e-76 288.9 218 67.4
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 4.4e-76 288.5 221 64.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.8e-75 285.8 219 66.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.7e-75 285.4 217 65.9
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 6.3e-75 284.6 220 66.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 6.3e-75 284.6 220 66.4
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 8.3e-75 284.3 201 70.6
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.1e-74 283.9 217 65.0
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-74 283.9 221 67.0
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-74 283.9 221 67.0
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.1e-74 283.9 224 63.8
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 4.1e-74 282.0 216 67.1
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.6e-73 280.0 213 65.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.6e-73 280.0 213 65.3
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.5e-73 278.9 220 63.2
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 5.9e-73 278.1 214 64.5
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 7.7e-73 277.7 220 65.9
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.0e-72 277.3 217 64.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 2.5e-71 272.7 215 65.1
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.1e-70 269.6 219 59.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 6.1e-70 268.1 220 63.2
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 3.0e-69 265.8 184 71.2
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 5.2e-69 265.0 168 76.8
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 8.9e-69 264.2 221 60.6
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 3.4e-68 262.3 221 57.9
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.7e-67 260.0 220 61.8
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.7e-67 258.8 217 62.2
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.4e-66 256.1 214 59.8
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 7.0e-66 254.6 169 73.4
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.0e-64 250.8 167 74.9
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 3.0e-64 249.2 223 58.7
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 6.6e-64 248.1 210 57.6
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 8.6e-64 247.7 214 54.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.3e-63 245.7 219 53.0
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 3.1e-61 239.2 215 56.7
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.8e-61 238.0 163 73.0
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 3.4e-60 235.7 159 71.7
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 7.0e-58 228.0 163 67.5
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.3e-56 223.0 171 64.3
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.5e-55 217.6 216 55.6
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 6.2e-54 214.9 137 76.6
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.5e-52 210.3 128 76.6
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 7.5e-52 208.0 135 74.1
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.1e-50 204.1 216 54.2
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 3.5e-49 199.1 221 50.2
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.0e-48 197.6 220 50.5
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.2e-43 179.9 217 50.2
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 8.4e-43 177.9 133 64.7
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 6.6e-32 141.7 90 76.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 8.1e-30 134.8 89 74.2
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 4.9e-27 125.6 96 64.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 8.4e-19 98.2 206 34.0
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 2.3e-08 63.5 146 30.8
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 3.0e-08 63.2 142 30.3
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 4.3e-07 59.3 151 29.1
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 4.3e-07 59.3 186 29.6
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 5.7e-07 58.9 156 30.1
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 2.1e-06 57.0 164 26.8
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 3.7e-06 56.2 135 30.4
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 3.7e-06 56.2 134 28.4
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 3.7e-06 56.2 144 27.8
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 4.8e-06 55.8 151 25.2
Eucgr.H03322 Eucalyptus grandis HOM05D003144 ORTHO05D003539 6.3e-06 55.5 141 27.0
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 8.2e-06 55.1 143 31.5
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 8.2e-06 55.1 143 31.5


User provided reference genes

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