Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.9e-128 461.8 223 100.0
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.3e-124 448.4 223 96.9
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.6e-121 438.7 223 96.0
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 8.5e-104 380.6 223 82.5
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 3.2e-103 378.6 223 82.1
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 9.4e-103 377.1 222 80.6
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 9.4e-103 377.1 223 82.1
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.6e-102 375.2 219 81.7
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 3.9e-101 371.7 221 81.0
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.0e-100 369.4 223 79.8
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.0e-100 369.4 222 79.7
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 4.4e-100 368.2 219 80.4
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.3e-99 366.7 221 80.1
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.4e-98 362.5 219 79.5
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.3e-98 361.3 218 79.4
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.6e-97 359.8 219 79.5
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.0e-97 359.4 217 79.7
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 2.6e-97 359.0 215 78.6
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.9e-97 357.8 217 78.8
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 7.7e-97 357.5 223 76.7
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.3e-96 356.7 218 78.0
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.2e-96 355.9 223 75.8
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 6.5e-96 354.4 211 81.5
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 6.5e-96 354.4 220 77.3
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 8.5e-96 354.0 215 78.1
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 8.5e-96 354.0 219 78.1
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.1e-95 353.6 215 77.7
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.9e-95 352.8 215 77.7
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 3.2e-95 352.1 213 77.9
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 3.2e-95 352.1 213 77.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.2e-95 352.1 219 77.6
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 4.2e-95 351.7 220 78.2
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 7.2e-95 350.9 219 76.7
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 9.4e-95 350.5 213 77.5
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 9.4e-95 350.5 223 75.8
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.2e-94 350.1 223 77.6
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 6.1e-94 347.8 219 76.7
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 8.0e-94 347.4 217 76.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.4e-93 346.7 219 75.8
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 5.2e-93 344.7 214 76.6
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 6.7e-93 344.4 222 75.2
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 6.7e-93 344.4 222 75.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 6.7e-93 344.4 215 76.3
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.1e-92 343.6 218 74.8
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.3e-92 342.0 220 74.5
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 4.4e-92 341.7 215 78.6
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 4.4e-92 341.7 215 78.1
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 4.4e-92 341.7 215 74.9
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 7.5e-92 340.9 215 77.7
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.3e-91 340.1 218 77.1
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.8e-91 339.0 225 74.7
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 6.3e-91 337.8 222 73.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 6.3e-91 337.8 221 74.7
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.1e-90 337.0 217 75.1
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.4e-90 336.7 213 76.1
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 7.0e-90 334.3 220 75.0
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.0e-90 334.3 224 72.8
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-89 333.6 219 75.8
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-89 333.6 219 75.8
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-89 333.6 219 75.8
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-89 333.6 219 75.8
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-89 333.6 219 75.8
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.0e-89 332.8 224 72.3
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 3.5e-89 332.0 217 72.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 4.5e-89 331.6 215 75.3
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.3e-88 330.1 218 72.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.2e-88 329.3 215 75.8
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 3.8e-88 328.6 216 72.2
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 3.2e-87 325.5 220 72.7
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 7.2e-87 324.3 210 73.8
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.1e-86 322.8 216 72.7
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.8e-85 319.7 220 70.9
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.6e-84 315.8 212 73.1
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 4.4e-84 315.1 214 71.5
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 5.7e-84 314.7 223 70.4
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 9.8e-84 313.9 217 71.9
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.3e-83 313.5 217 71.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-83 313.2 215 68.8
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.3e-83 311.2 223 69.5
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-82 310.5 221 69.7
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.4e-82 310.1 220 71.8
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.8e-82 309.7 213 70.4
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.4e-82 309.3 220 71.8
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 5.4e-82 308.1 221 67.9
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 4.5e-81 305.1 223 68.2
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.3e-80 303.5 220 69.1
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.7e-80 303.1 216 69.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 2.2e-80 302.8 219 67.6
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.9e-80 302.4 218 69.3
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 6.5e-80 301.2 220 69.1
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 6.5e-80 301.2 220 69.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 8.5e-80 300.8 224 67.0
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.5e-79 300.1 217 67.3
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.5e-79 299.3 219 68.5
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.2e-79 298.9 213 68.5
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.2e-79 298.9 213 68.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.2e-79 298.9 220 66.4
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 5.5e-79 298.1 214 67.8
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 7.2e-79 297.7 201 73.1
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 9.4e-79 297.4 217 67.7
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.6e-78 296.6 216 69.4
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.7e-78 295.8 221 68.8
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.7e-78 295.8 221 68.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.3e-77 292.7 217 66.8
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 3.4e-76 288.9 215 67.9
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.8e-75 285.8 219 62.1
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.8e-74 283.1 220 66.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 7.0e-74 281.2 220 65.0
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 1.0e-72 277.3 221 62.9
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.7e-72 276.6 175 77.1
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.9e-72 275.8 221 60.2
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.8e-72 275.4 217 65.0
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.9e-71 273.1 220 63.6
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.5e-71 272.7 168 78.6
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.0e-69 267.3 223 61.4
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.3e-69 266.2 169 75.7
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 7.5e-68 261.2 167 77.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 2.2e-67 259.6 210 60.0
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.3e-67 257.7 214 59.8
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.4e-66 255.0 214 56.1
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.0e-65 253.1 219 54.3
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 3.5e-65 252.3 215 58.6
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.0e-64 249.2 163 75.5
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 8.0e-62 241.1 159 73.6
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.8e-61 240.0 163 70.6
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 4.9e-59 231.9 171 66.7
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.2e-58 227.6 216 56.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 1.7e-56 223.4 136 78.7
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 4.3e-55 218.8 216 56.5
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.3e-53 213.0 127 77.2
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.3e-53 213.0 220 52.7
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.2e-52 210.7 134 74.6
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 9.8e-52 207.6 221 51.6
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.8e-46 189.5 217 51.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 2.6e-44 183.0 132 65.9
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 9.3e-34 147.9 90 78.9
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 6.6e-32 141.7 89 77.5
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 1.1e-29 134.4 96 67.7
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 2.4e-18 96.7 206 34.0
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 1.8e-08 63.9 146 30.8
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 2.5e-07 60.1 142 29.6
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 3.3e-07 59.7 156 30.1
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 3.3e-07 59.7 141 30.5
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 4.3e-07 59.3 138 29.0
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 4.3e-07 59.3 144 30.6
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 5.7e-07 58.9 163 28.8
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 5.7e-07 58.9 164 26.8
CANSAT21G0050 Cannabis sativa HOM05D007612 ORTHO05D009468 2.1e-06 57.0 124 33.9
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 2.8e-06 56.6 134 28.4
Eucgr.H03322 Eucalyptus grandis HOM05D003144 ORTHO05D003539 4.8e-06 55.8 141 26.2
Hund13998 Selenicereus undatus HOM05D003144 ORTHO05D003539 4.8e-06 55.8 157 26.1
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 6.3e-06 55.5 143 31.5
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 6.3e-06 55.5 143 31.5
Zm00001eb188310 Zea mays HOM05D003144 ORTHO05D003539 6.3e-06 55.5 171 28.7


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