Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 0.0e+00 1291.9 842 100.0
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 0.0e+00 1178.7 863 88.6
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.0e-287 993.4 864 78.7
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.8e-255 886.3 865 75.5
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.1e-217 760.8 856 64.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 5.5e-204 715.3 804 63.7
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 8.8e-202 708.0 873 62.1
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.5e-201 707.2 859 61.1
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 5.7e-201 705.3 861 61.4
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 9.7e-201 704.5 867 61.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 1.2e-198 697.6 857 60.9
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.0e-198 696.8 791 63.1
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.0e-197 694.5 825 64.8
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.9e-197 693.0 873 60.8
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 5.0e-197 692.2 835 62.5
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 8.5e-197 691.4 872 60.3
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 8.5e-197 691.4 867 60.0
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.1e-196 691.0 805 68.1
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.1e-196 691.0 824 61.5
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 9.7e-193 677.9 849 59.8
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.6e-190 670.6 859 59.3
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 1.6e-190 670.6 784 63.4
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.0e-190 670.2 859 58.9
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 1.5e-188 664.1 860 60.5
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 3.2e-188 662.9 825 63.8
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.8e-186 657.1 861 58.5
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.7e-182 643.3 810 64.0
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 2.9e-181 639.8 853 58.4
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 6.5e-181 638.6 867 56.7
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 5.2e-178 629.0 852 60.2
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 6.8e-178 628.6 756 63.9
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.8e-178 628.6 850 57.5
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 7.5e-177 625.2 811 59.7
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 9.8e-177 624.8 810 56.4
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 9.8e-177 624.8 810 56.4
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 9.8e-177 624.8 794 57.3
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.7e-176 624.0 855 57.7
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 2.2e-176 623.6 829 51.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 3.7e-176 622.9 815 56.6
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 6.3e-176 622.1 696 65.5
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 6.3e-176 622.1 820 61.0
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 8.3e-176 621.7 798 56.9
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 8.3e-176 621.7 793 60.3
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.4e-175 620.9 822 51.2
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.4e-175 620.2 860 55.8
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.0e-175 618.6 856 55.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.0e-175 618.6 856 55.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 7.0e-175 618.6 863 55.5
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 9.1e-175 618.2 781 62.7
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.7e-173 614.0 856 57.0
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.7e-173 614.0 824 60.6
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 1.1e-172 611.3 862 55.6
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.1e-172 611.3 852 55.6
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 4.2e-172 609.4 833 58.5
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 2.7e-171 606.7 861 56.2
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.8e-170 604.0 786 51.8
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.3e-170 603.6 743 59.4
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 3.0e-170 603.2 764 63.1
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 4.0e-170 602.8 852 56.7
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 5.2e-170 602.4 786 51.7
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 8.8e-170 601.7 758 58.6
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 8.8e-170 601.7 784 57.5
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.3e-165 587.8 856 48.6
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.3e-165 587.0 854 56.3
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 2.9e-165 586.6 867 47.8
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 3.3e-164 583.2 844 54.1
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 5.6e-164 582.4 799 56.8
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 8.0e-163 578.6 852 56.3
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.8e-162 577.4 819 50.2
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 2.3e-162 577.0 856 54.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 2.6e-161 573.5 785 56.2
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 5.7e-161 572.4 802 57.5
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 7.5e-161 572.0 790 57.5
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 8.3e-160 568.5 753 57.6
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.2e-158 564.7 813 54.9
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 3.9e-157 559.7 874 47.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 4.3e-156 556.2 846 50.0
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.4e-154 551.2 830 48.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 3.5e-150 536.6 803 54.8
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 3.3e-148 530.0 853 53.3
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 3.3e-148 530.0 800 54.1
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.5e-145 521.2 830 50.7
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 9.8e-145 518.5 800 54.5
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 5.8e-137 492.7 782 44.2
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 2.2e-128 464.2 538 68.2
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 7.1e-119 432.6 525 67.2
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 5.3e-114 416.4 817 40.0
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 4.3e-108 396.7 804 46.4
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.8e-98 364.8 539 54.9
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 1.2e-97 362.1 810 42.7
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 2.0e-89 334.7 398 61.6
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 3.6e-86 323.9 524 59.5
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 3.3e-84 317.4 411 66.2
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.0e-69 267.7 801 39.8
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 1.3e-67 262.3 656 30.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 2.9e-64 251.1 731 44.5
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.2e-60 239.2 188 61.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.0e-53 216.1 227 54.6
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.4e-50 205.7 817 37.3
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 2.9e-48 198.0 222 51.4
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 2.3e-40 171.8 311 51.8
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 2.5e-31 141.7 519 30.8
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 4.1e-26 124.4 168 43.5
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.8e-21 109.0 120 52.5
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 8.9e-21 106.7 168 38.7
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.2e-18 98.2 106 71.7
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 7.1e-18 97.1 74 63.5
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 1.3e-11 76.3 186 50.0


User provided reference genes

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