Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 1.2e-126 456.4 227 100.0
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.6e-94 349.7 208 84.1
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 7.1e-90 334.3 227 71.4
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 4.3e-79 298.5 229 65.5
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 4.2e-74 282.0 224 57.6
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 2.1e-73 279.6 229 60.3
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 9.6e-71 270.8 230 57.4
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.6e-70 270.0 224 57.6
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.6e-70 270.0 224 57.6
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 6.2e-70 268.1 228 57.0
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 8.2e-70 267.7 238 56.7
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 1.2e-68 263.8 228 55.3
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 3.4e-68 262.3 221 59.3
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 4.5e-68 261.9 225 55.1
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 4.2e-66 255.4 228 55.7
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 2.7e-65 252.7 256 50.8
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 3.5e-65 252.3 227 52.9
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 7.9e-65 251.1 232 53.0
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 6.7e-64 248.1 228 53.9
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 1.3e-62 243.8 239 52.3
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 1.1e-61 240.7 228 53.5
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 2.4e-61 239.6 230 52.2
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 9.0e-61 237.7 230 51.7
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.2e-60 237.3 232 53.0
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 1.5e-60 236.9 229 54.1
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 2.0e-60 236.5 228 52.6
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 2.6e-60 236.1 230 51.7
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 5.9e-60 235.0 230 51.7
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 2.9e-59 232.6 225 48.4
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 5.0e-59 231.9 224 50.0
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 1.9e-58 229.9 229 49.8
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 7.2e-58 228.0 221 48.9
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 1.6e-57 226.9 233 49.4
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.0e-56 224.2 206 50.5
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.4e-56 223.8 228 49.1
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 5.1e-56 221.9 197 53.8
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 5.1e-56 221.9 196 54.6
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 6.7e-56 221.5 232 50.4
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.1e-55 220.7 225 47.6
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 1.3e-54 217.2 206 49.5
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 2.2e-54 216.5 207 52.7
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.8e-54 216.1 242 47.9
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.1e-53 214.2 227 47.1
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.1e-53 214.2 195 48.7
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 1.4e-53 213.8 225 48.0
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 1.8e-53 213.4 191 50.3
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 1.8e-53 213.4 268 42.2
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 2.4e-53 213.0 206 48.5
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.4e-53 213.0 242 47.5
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 3.1e-53 212.6 241 47.3
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 4.1e-53 212.2 225 49.8
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 5.3e-53 211.8 230 47.4
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 9.1e-53 211.1 209 48.8
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 1.5e-52 210.3 197 52.3
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.6e-52 209.5 242 47.1
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 2.6e-52 209.5 225 46.7
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 5.9e-52 208.4 242 46.7
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 5.9e-52 208.4 225 49.3
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 1.0e-51 207.6 216 50.0
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.8e-51 205.7 203 48.3
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 1.1e-50 204.1 231 43.7
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 2.5e-50 203.0 196 52.0
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.2e-50 202.6 199 48.2
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 3.6e-49 199.1 225 45.8
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 2.3e-48 196.4 231 45.9
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 8.8e-48 194.5 238 45.4
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 1.1e-47 194.1 210 46.7
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.5e-47 193.7 231 45.9
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 2.0e-47 193.4 239 44.8
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 2.0e-47 193.4 239 45.2
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 4.4e-47 192.2 238 44.5
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 5.7e-47 191.8 166 56.0
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.3e-46 190.7 226 43.4
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 1.7e-46 190.3 239 44.8
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 3.7e-46 189.1 231 45.9
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 4.8e-46 188.7 239 43.9
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 8.2e-46 188.0 245 42.4
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 3.1e-45 186.0 226 46.0
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 3.5e-44 182.6 231 44.2
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 1.6e-41 173.7 256 38.3
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 1.8e-40 170.2 249 36.5
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 5.2e-40 168.7 226 38.9
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 1.5e-39 167.2 156 51.9
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 2.8e-38 162.9 185 43.2
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 3.7e-38 162.5 151 54.3
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 4.8e-38 162.2 240 42.1
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 3.1e-37 159.5 185 42.2
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 4.1e-37 159.1 234 37.6
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 7.0e-37 158.3 224 41.1
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 3.8e-35 152.5 195 42.1
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 8.5e-35 151.4 122 60.7
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 2.5e-34 149.8 171 45.0
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 9.8e-31 137.9 117 55.6
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 2.1e-25 120.2 174 43.1
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 6.8e-24 115.2 160 40.6
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 1.2e-23 114.4 144 44.4
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 4.9e-22 109.0 122 41.0
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.8e-21 107.1 193 33.7
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.6e-20 104.0 82 56.1
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 3.3e-18 96.3 114 45.6
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 7.5e-15 85.1 88 48.9
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 3.7e-14 82.8 195 28.7
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.2e-12 77.8 84 47.6
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.3e-11 73.6 62 58.1
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 3.6e-09 66.2 185 27.0
CBR_g5643 Chara braunii HOM05D062952 ORTHO05D008946 8.9e-08 61.6 218 21.6
Oeu008469.1 Olea europaea HOM05D007171 ORTHO05D008946 4.4e-07 59.3 95 34.7


User provided reference genes

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