Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.0e-259 898.7 470 100.0
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 5.2e-244 847.4 485 94.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.3e-215 752.3 460 87.2
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.6e-213 745.0 476 84.2
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.1e-212 743.4 475 84.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 8.3e-210 733.8 472 82.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 3.9e-207 724.9 473 80.5
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.0e-207 724.5 472 80.5
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 9.5e-206 720.3 464 81.7
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 4.0e-204 714.9 467 81.4
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.1e-198 696.8 472 79.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.9e-198 696.0 465 77.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.6e-198 694.5 466 79.6
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 5.6e-198 694.5 472 78.2
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.8e-197 692.2 474 78.1
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.6e-197 691.8 472 77.8
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 3.1e-196 688.7 445 81.6
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 5.2e-196 688.0 472 78.2
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 8.9e-196 687.2 445 80.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 2.6e-195 685.6 474 76.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 5.8e-195 684.5 466 76.6
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.8e-195 684.5 470 76.8
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 9.9e-195 683.7 443 80.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.3e-194 683.3 458 79.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 3.8e-194 681.8 468 76.1
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 4.9e-194 681.4 466 78.1
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.1e-193 680.2 499 74.3
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.4e-193 679.9 472 77.1
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.9e-193 679.5 444 80.2
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 2.4e-193 679.1 457 78.8
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 7.1e-193 677.6 445 80.0
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.6e-192 676.4 466 75.8
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.6e-192 676.4 470 78.1
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.0e-191 673.7 472 75.6
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.0e-191 673.7 467 75.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.3e-191 673.3 474 76.4
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.7e-191 672.9 470 77.7
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.3e-191 672.5 475 76.6
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 2.3e-191 672.5 470 77.7
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.0e-191 672.2 474 76.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 3.9e-191 671.8 494 72.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.1e-191 671.4 472 76.3
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.9e-190 669.5 472 75.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.5e-190 669.1 472 74.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.5e-190 669.1 442 79.6
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.3e-190 668.7 471 75.2
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 3.3e-190 668.7 446 79.1
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.6e-189 666.4 471 74.7
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.6e-189 666.4 462 76.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 4.7e-189 664.8 474 73.8
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 8.1e-189 664.1 474 74.7
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.1e-188 663.7 476 73.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.8e-188 662.9 474 74.9
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.8e-188 662.9 428 81.3
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.8e-188 662.9 472 74.8
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 3.1e-188 662.1 464 75.2
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 4.0e-188 661.8 437 79.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.0e-188 661.8 456 75.7
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.6e-187 659.1 470 73.4
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 4.4e-187 658.3 474 74.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.7e-186 656.4 474 74.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.9e-186 655.6 467 74.3
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.4e-186 654.1 466 74.2
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.9e-185 652.9 466 74.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.2e-184 650.2 454 76.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.2e-184 650.2 467 72.6
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.1e-184 649.4 467 72.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 3.5e-184 648.7 466 74.0
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.0e-183 647.1 468 73.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.3e-183 646.7 461 74.0
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 3.0e-183 645.6 466 74.7
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.9e-183 645.2 465 73.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.9e-183 645.2 466 73.0
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 5.1e-183 644.8 466 73.2
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 6.6e-183 644.4 466 73.0
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 4.3e-182 641.7 409 82.4
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 5.6e-182 641.3 466 73.2
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 9.6e-182 640.6 466 72.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-181 640.2 466 73.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.6e-181 639.8 466 72.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 8.1e-181 637.5 467 72.8
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.1e-180 637.1 466 73.0
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.4e-180 636.7 409 81.9
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 2.4e-180 636.0 456 75.4
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 3.1e-180 635.6 466 73.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-180 635.6 463 72.8
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 9.9e-179 630.6 479 72.2
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 9.9e-179 630.6 486 69.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.4e-177 626.7 399 83.0
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 4.2e-177 625.2 492 69.1
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.3e-173 613.6 545 62.6
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 3.7e-173 612.1 434 75.1
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 9.0e-172 607.4 406 78.3
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.6e-171 605.9 421 77.2
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.4e-169 600.1 417 76.5
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.5e-168 595.5 422 75.4
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.6e-168 595.1 427 72.6
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 5.3e-164 581.6 422 71.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.5e-163 580.1 394 78.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.0e-160 568.2 409 75.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-159 567.4 397 77.3
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.1e-158 563.9 424 69.6
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 4.1e-156 555.4 473 64.3
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.4e-151 540.4 386 72.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.8e-148 530.0 423 66.2
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.6e-144 516.9 341 81.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.0e-139 500.0 474 62.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 4.8e-133 478.8 434 63.6
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.0e-130 471.1 437 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.0e-127 459.5 360 67.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 3.6e-120 436.0 434 57.6
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 8.0e-120 434.9 327 71.9
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 5.2e-119 432.2 329 67.8
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.5e-115 419.5 434 54.4
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.0e-107 393.7 239 86.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.0e-107 393.7 386 58.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.8e-88 330.1 242 74.4
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.7e-83 313.5 203 83.3
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.2e-78 298.1 200 77.0
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.4e-76 290.4 195 76.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.8e-70 269.2 202 69.8
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.3e-65 253.4 216 61.1
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.8e-64 249.6 182 76.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 8.4e-61 238.8 147 81.6
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.3e-53 214.9 106 99.1
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.0e-47 193.4 457 35.2
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.3e-45 188.3 124 73.4
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.9e-35 152.5 137 62.8
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.9e-35 152.5 137 62.8
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.5e-33 147.5 139 59.0
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.3e-32 145.2 101 78.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.7e-32 144.8 156 58.3
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 3.1e-31 140.6 261 39.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.0e-30 137.9 102 71.6
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.5e-29 132.5 104 70.2
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.9e-28 131.3 261 37.5
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 4.7e-19 100.1 85 60.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 3.0e-18 97.4 191 41.9
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.5e-14 84.0 70 60.0
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.5e-14 84.0 70 60.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-13 81.6 82 56.1
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 6.5e-13 79.7 44 79.5
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 6.5e-13 79.7 44 79.5
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-12 77.8 118 46.6
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.5e-12 77.8 91 53.8
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 4.2e-12 77.0 131 42.7
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 7.2e-12 76.3 118 45.8
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 7.2e-12 76.3 118 45.8
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 7.2e-12 76.3 118 45.8
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 7.2e-12 76.3 118 45.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-11 75.5 118 45.8
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.2e-11 75.5 64 62.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.2e-11 75.5 163 36.2
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.7e-11 74.3 61 55.7
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-11 73.9 81 53.1
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 4.7e-11 73.6 64 60.9
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.7e-11 73.6 64 60.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 4.7e-11 73.6 65 56.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 6.1e-11 73.2 63 61.9
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 8.0e-11 72.8 64 60.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 8.0e-11 72.8 173 32.9
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.3e-10 71.2 76 55.3
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 8.8e-10 69.3 120 44.2
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 5.4e-07 60.1 47 68.1
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 9.1e-07 59.3 57 54.4
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 5.9e-06 56.6 45 62.2


User provided reference genes

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