Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 9.7e-237 823.2 437 100.0
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 3.6e-231 804.7 452 95.1
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.1e-207 725.7 437 87.4
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.3e-201 705.7 432 86.6
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 5.0e-201 704.5 432 86.6
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.2e-189 666.8 437 81.5
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.6e-186 654.8 433 80.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.1e-182 643.7 438 77.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-181 640.2 432 76.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.4e-181 638.3 433 79.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 7.5e-181 637.5 436 76.6
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.9e-180 634.8 432 78.9
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 8.3e-180 634.0 437 76.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.9e-179 632.9 435 76.1
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 4.1e-179 631.7 435 76.3
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 5.4e-179 631.3 437 75.7
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.1e-178 629.4 429 76.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.7e-178 629.0 435 76.6
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 6.0e-178 627.9 436 75.7
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.2e-175 620.2 435 76.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 4.7e-175 618.2 432 75.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 8.1e-175 617.5 433 75.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.0e-173 612.8 436 75.5
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 9.9e-173 610.5 438 72.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-172 610.1 435 74.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.6e-170 601.7 433 73.9
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.6e-170 601.7 434 73.3
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.3e-169 599.4 433 72.5
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.5e-168 596.7 434 73.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.9e-168 596.3 434 74.0
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.5e-168 595.9 434 73.7
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.3e-168 595.5 434 72.8
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.2e-167 593.6 433 72.5
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 2.1e-167 592.8 433 72.7
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.1e-166 589.0 432 72.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.5e-165 586.6 437 71.4
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.5e-165 586.6 438 72.4
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.4e-165 585.5 432 71.3
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.4e-165 585.5 433 71.8
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.4e-165 585.1 437 70.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.7e-164 583.2 431 72.2
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.9e-164 582.4 412 74.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.2e-163 578.9 463 68.9
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 9.3e-163 577.4 436 70.4
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 9.3e-163 577.4 429 70.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.2e-162 577.0 436 70.4
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.6e-162 576.6 435 71.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.5e-162 575.5 432 72.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.5e-162 575.5 430 71.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.5e-162 575.5 437 69.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.6e-162 575.1 429 70.4
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.0e-161 573.9 431 68.2
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.3e-161 573.5 431 71.7
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-161 573.5 434 70.5
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.3e-161 573.5 429 70.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 5.1e-161 571.6 431 71.2
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 8.7e-161 570.9 440 69.8
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 8.7e-161 570.9 434 70.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.9e-160 569.7 433 70.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.3e-160 568.9 432 70.1
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.6e-160 568.2 435 72.4
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.3e-160 567.8 518 62.7
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 9.6e-160 567.4 434 69.4
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 9.6e-160 567.4 430 71.6
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.3e-159 567.0 434 69.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 2.1e-159 566.2 438 70.1
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 3.6e-159 565.5 435 70.1
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 8.1e-159 564.3 416 72.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.4e-158 563.5 436 68.6
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.4e-158 562.8 439 69.5
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 2.4e-158 562.8 472 66.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.1e-158 562.4 433 69.7
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 4.0e-158 562.0 437 69.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.3e-158 561.6 437 69.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 5.3e-158 561.6 437 69.1
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 6.9e-158 561.2 437 69.6
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 9.0e-158 560.8 437 68.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.5e-157 560.1 431 68.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.5e-157 560.1 432 72.5
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.0e-157 559.7 437 69.1
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 5.8e-157 558.1 429 69.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 9.9e-157 557.4 430 70.2
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 9.9e-157 557.4 430 70.2
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.7e-156 556.6 434 70.7
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.2e-156 556.2 428 68.7
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 8.4e-156 554.3 438 69.2
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 8.4e-156 554.3 436 69.3
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.4e-155 553.5 436 68.3
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 5.4e-155 551.6 430 69.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 7.1e-155 551.2 435 69.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.7e-154 549.3 437 68.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.3e-153 547.0 372 76.9
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.8e-153 546.6 435 68.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.9e-153 545.4 436 67.7
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.9e-153 545.4 415 68.9
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.5e-152 543.5 429 67.8
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.3e-152 542.3 436 67.2
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-152 541.6 430 68.4
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.3e-151 540.4 438 65.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-150 537.3 433 67.4
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 6.9e-150 534.6 433 64.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.5e-149 533.5 419 67.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.6e-149 532.7 412 70.9
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-148 530.4 433 67.0
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.7e-148 530.0 433 66.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.8e-148 528.9 419 69.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.1e-147 527.3 424 67.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-146 522.7 438 66.7
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.3e-145 519.6 394 69.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.4e-142 509.6 444 63.7
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.9e-139 500.0 433 64.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.5e-139 498.4 409 65.5
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.7e-137 491.1 435 66.9
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 3.3e-136 489.2 430 62.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 5.7e-136 488.4 431 63.3
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.1e-134 484.2 512 56.4
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 5.3e-134 481.9 423 62.2
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 9.0e-134 481.1 432 60.9
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.7e-130 469.5 314 80.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 8.8e-129 464.5 430 60.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.0e-128 463.4 444 60.4
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 4.7e-114 415.6 381 64.3
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 6.1e-114 415.2 429 56.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.3e-112 409.5 344 64.5
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 4.8e-111 405.6 301 71.8
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.1e-110 404.4 297 69.0
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.2e-109 401.0 430 54.9
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.7e-100 370.5 426 47.9
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 5.5e-99 365.5 429 48.7
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 4.5e-93 345.9 317 59.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.4e-86 323.6 250 68.8
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.9e-78 297.4 325 55.4
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.6e-77 292.7 179 79.9
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.7e-76 290.8 427 46.1
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.0e-76 290.0 205 79.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 8.9e-65 251.9 183 71.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.6e-61 239.6 175 70.9
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.0e-61 239.2 194 63.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.9e-60 236.5 192 67.2
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.2e-58 229.2 164 78.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-50 203.8 151 77.5
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.6e-48 197.2 242 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.9e-45 185.7 139 62.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.1e-37 161.0 120 75.8
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 6.5e-31 139.4 117 65.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-29 134.4 90 71.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.1e-25 120.6 103 60.2
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.6e-24 117.5 330 31.8
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-23 114.0 125 52.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.8e-23 113.6 80 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 8.2e-18 95.9 119 45.4
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-11 74.7 422 24.4
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 2.4e-09 67.8 53 64.2
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.4e-08 63.9 438 24.9
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.5e-08 63.5 39 79.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.2e-07 61.2 201 26.9


User provided reference genes

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