Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.7e-77 292.7 166 100.0
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 2.8e-35 152.5 162 66.7
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 7.6e-25 117.9 162 47.5
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 1.3e-21 107.1 167 41.3
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 7.4e-20 101.3 174 53.4
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 1.6e-19 100.1 172 40.7
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 3.4e-17 92.4 177 41.8
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 2.9e-16 89.4 172 42.4
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 2.9e-16 89.4 174 42.0
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.0e-16 88.6 81 58.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 5.0e-16 88.6 81 58.0
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 3.2e-15 85.9 165 47.9
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 5.5e-15 85.1 92 48.9
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 1.2e-14 84.0 92 48.9
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.6e-14 83.6 93 49.5
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.7e-14 82.8 92 54.3
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.7e-14 82.8 78 57.7
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.4e-13 80.5 80 56.2
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 1.8e-13 80.1 73 57.5
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 2.3e-13 79.7 83 53.0
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 3.0e-13 79.3 157 36.9
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 5.1e-13 78.6 75 52.0
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 6.7e-13 78.2 102 40.2
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 6.7e-13 78.2 91 51.6
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.5e-12 77.0 99 44.4
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.5e-12 77.0 162 33.3
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.0e-12 76.6 99 45.5
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.0e-12 76.6 99 45.5
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 4.3e-12 75.5 90 44.4
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 5.7e-12 75.1 82 51.2
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 7.4e-12 74.7 165 34.5
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 7.4e-12 74.7 172 44.8
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 9.7e-12 74.3 105 44.8
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 2.8e-11 72.8 88 47.7
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 3.7e-11 72.4 174 42.0
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 3.7e-11 72.4 83 54.2
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 4.8e-11 72.0 102 42.2
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 4.8e-11 72.0 167 37.1
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 6.3e-11 71.6 79 54.4
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 6.3e-11 71.6 172 35.5
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 6.3e-11 71.6 164 32.3
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 8.2e-11 71.2 67 55.2
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 8.2e-11 71.2 105 41.9
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 1.1e-10 70.9 171 32.2
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.1e-10 70.9 80 48.8
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.4e-10 70.5 82 50.0
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.8e-10 70.1 104 43.3
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.8e-10 70.1 60 58.3
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 2.4e-10 69.7 77 50.6
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.4e-10 69.7 105 43.8
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 3.1e-10 69.3 90 43.3
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 3.1e-10 69.3 88 46.6
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.1e-10 69.3 80 48.8
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 3.1e-10 69.3 79 49.4
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 5.3e-10 68.6 75 57.3
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 6.9e-10 68.2 76 52.6
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 9.1e-10 67.8 78 51.3
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 1.2e-09 67.4 85 49.4
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.2e-09 67.4 70 51.4
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.5e-09 67.0 78 47.4
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.0e-09 66.6 89 48.3
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 2.0e-09 66.6 97 39.2
TPR.G23268 Trifolium pratense HOM05D005967 ORTHO05D005174 2.0e-09 66.6 79 51.9
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.6e-09 66.2 71 49.3
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 2.6e-09 66.2 83 50.6
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.6e-09 66.2 42 78.6
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 3.4e-09 65.9 81 46.9
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 3.4e-09 65.9 175 41.1
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.5e-09 65.5 117 39.3
Phvul.008G100200 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 7.7e-09 64.7 171 35.1
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 1.3e-08 63.9 108 38.0
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.7e-08 63.5 82 50.0
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.7e-08 63.5 82 50.0
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.7e-08 63.5 82 50.0
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 1.7e-08 63.5 57 59.6
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.7e-08 63.5 111 38.7
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 2.2e-08 63.2 79 46.8
Sed0010435 Sechium edule HOM05D023073 ORTHO05D005174 2.2e-08 63.2 85 40.0
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 2.2e-08 63.2 66 51.5
Medtr7g060440 Medicago truncatula HOM05D005967 ORTHO05D005174 5.0e-08 62.0 81 54.3
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 8.5e-08 61.2 79 43.0
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 8.5e-08 61.2 61 54.1
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 8.5e-08 61.2 80 45.0
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 8.5e-08 61.2 77 46.8
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 8.5e-08 61.2 85 41.2
SGA_v2.0_scaffold126G33790 Striga asiatica HOM05D005967 ORTHO05D005174 8.5e-08 61.2 98 39.8
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 8.5e-08 61.2 147 33.3
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.1e-07 60.8 90 44.4
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.1e-07 60.8 87 41.4
MELO3C003127.2 Cucumis melo HOM05D023073 ORTHO05D005174 1.1e-07 60.8 95 43.2
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 1.1e-07 60.8 67 50.7
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.4e-07 60.5 80 47.5
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 1.9e-07 60.1 91 45.1
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.9e-07 60.1 70 50.0
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 1.9e-07 60.1 70 48.6
Sp7g08770 Schrenkiella parvula HOM05D010528 ORTHO05D005174 1.9e-07 60.1 114 36.8
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 2.5e-07 59.7 98 37.8
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 2.5e-07 59.7 68 44.1
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 3.2e-07 59.3 94 40.4
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 3.2e-07 59.3 72 44.4
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 3.2e-07 59.3 76 42.1
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 4.2e-07 58.9 97 38.1
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 4.2e-07 58.9 97 37.1
DCAR_017869 Daucus carota HOM05D031528 ORTHO05D035026 5.5e-07 58.5 65 46.2
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 7.2e-07 58.2 98 36.7
SalBow4G0071 Salvia bowleyana HOM05D005967 ORTHO05D005174 7.2e-07 58.2 66 50.0
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 9.4e-07 57.8 64 51.6
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 9.4e-07 57.8 109 38.5
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 9.4e-07 57.8 38 65.8
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.2e-06 57.4 112 40.2
MD12G1140600 Malus domestica HOM05D005967 ORTHO05D005174 1.6e-06 57.0 34 70.6
MSTRG.19086 Avicennia marina HOM05D005967 ORTHO05D005174 2.1e-06 56.6 65 49.2
SalBow3G2287 Salvia bowleyana HOM05D005967 ORTHO05D005174 2.1e-06 56.6 37 67.6
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 2.1e-06 56.6 83 44.6
Gohir.A09G156500 Gossypium hirsutum HOM05D036294 ORTHO05D036268 2.7e-06 56.2 75 52.0
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 2.7e-06 56.2 58 56.9
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 2.7e-06 56.2 89 46.1
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 3.6e-06 55.8 65 47.7
CsaV3_4G024960 Cucumis sativus L. HOM05D023073 ORTHO05D005174 4.7e-06 55.5 109 38.5
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 6.1e-06 55.1 66 42.4
A03p00680 Brassica napus HOM05D010528 ORTHO05D005174 7.9e-06 54.7 77 41.6
A03p00720 Brassica napus HOM05D010528 ORTHO05D005174 7.9e-06 54.7 77 41.6
C03p00950 Brassica napus HOM05D010528 ORTHO05D005174 7.9e-06 54.7 77 41.6
BolC3t12657H Brassica oleracea HOM05D010528 ORTHO05D005174 7.9e-06 54.7 77 41.6
BraA03t09457Z Brassica rapa HOM05D010528 ORTHO05D005174 7.9e-06 54.7 77 41.6
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 7.9e-06 54.7 78 39.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.9e-06 54.7 92 37.0


User provided reference genes

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