Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 2.1e-146 522.3 255 100.0
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 6.8e-73 278.1 257 60.3
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 1.9e-67 260.0 257 57.2
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 4.3e-67 258.8 234 61.5
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 4.1e-62 242.3 263 52.5
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 1.4e-54 217.2 265 48.7
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.9e-54 216.9 263 47.1
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 2.3e-52 209.9 261 49.8
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 1.1e-51 207.6 262 48.5
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 1.5e-51 207.2 266 47.7
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 7.3e-51 204.9 240 48.3
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 4.7e-50 202.2 263 46.4
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 1.4e-49 200.7 261 46.4
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 5.8e-48 195.3 258 48.4
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 9.9e-48 194.5 259 47.9
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 2.2e-47 193.4 231 48.1
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.1e-46 191.0 258 47.7
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 1.9e-46 190.3 258 47.3
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 5.4e-46 188.7 263 42.6
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 1.6e-45 187.2 258 43.8
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 6.0e-45 185.3 257 47.5
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 1.3e-44 184.1 265 44.9
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.3e-44 184.1 264 45.1
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 6.6e-44 181.8 262 42.0
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 8.6e-44 181.4 262 45.0
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 5.6e-43 178.7 260 45.8
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 5.6e-43 178.7 261 46.0
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 2.1e-42 176.8 258 42.6
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 4.7e-42 175.6 259 45.2
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 1.4e-41 174.1 264 41.3
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 4.4e-40 169.1 256 43.4
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 7.6e-40 168.3 256 41.8
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.6e-40 168.3 259 43.2
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.6e-40 168.3 259 43.2
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 6.4e-39 165.2 266 42.9
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 8.4e-39 164.9 263 43.3
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 8.4e-39 164.9 263 43.3
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 1.9e-38 163.7 261 44.4
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 3.2e-38 162.9 256 41.4
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 5.4e-38 162.2 256 40.6
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 1.2e-37 161.0 266 42.1
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 4.6e-37 159.1 264 42.0
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 6.0e-37 158.7 257 40.1
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 7.8e-37 158.3 255 40.0
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 8.7e-36 154.8 264 42.0
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 1.5e-35 154.1 254 41.7
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.9e-35 153.7 266 39.5
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 1.3e-34 151.0 269 40.1
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 6.2e-34 148.7 276 39.1
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 2.4e-33 146.7 261 41.0
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 4.0e-33 146.0 241 41.9
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 5.3e-33 145.6 262 39.3
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.5e-32 144.1 263 39.5
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 7.6e-32 141.7 252 40.5
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 7.6e-32 141.7 250 41.2
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 2.2e-31 140.2 267 40.4
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 3.8e-31 139.4 244 41.8
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 3.8e-31 139.4 272 38.6
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 6.4e-31 138.7 264 39.4
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.1e-30 137.9 224 42.4
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 2.4e-30 136.7 265 40.0
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 4.2e-30 136.0 227 38.3
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 7.1e-30 135.2 256 37.1
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 6.0e-29 132.1 249 39.4
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 7.9e-29 131.7 239 40.6
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 1.3e-28 131.0 253 40.3
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 5.1e-28 129.0 260 39.6
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 6.6e-28 128.6 267 36.7
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 8.7e-28 128.3 256 37.5
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 2.5e-27 126.7 229 41.0
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 5.6e-27 125.6 243 39.5
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 3.2e-22 109.8 244 35.2
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 7.1e-22 108.6 230 33.5
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 3.5e-21 106.3 258 32.6
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 4.6e-21 105.9 241 36.1
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 6.7e-20 102.1 258 33.7
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 1.6e-18 97.4 256 33.6
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 2.8e-18 96.7 244 33.2
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 5.3e-17 92.4 263 31.2
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 9.0e-17 91.7 161 41.6
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 9.0e-17 91.7 276 33.0
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 4.5e-16 89.4 256 32.0
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 3.2e-14 83.2 232 33.6
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 2.1e-13 80.5 271 32.5
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 3.0e-12 76.6 259 30.1
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 1.1e-11 74.7 94 41.5
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 1.5e-11 74.3 92 41.3
THA.LOC104827023 Tarenaya hassleriana HOM05D012592 ORTHO05D008066 2.5e-11 73.6 262 27.9
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 3.3e-11 73.2 90 42.2
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 4.3e-11 72.8 90 42.2
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 4.3e-11 72.8 238 29.0
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 5.7e-11 72.4 90 42.2
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 7.4e-11 72.0 65 53.8
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 7.4e-11 72.0 94 40.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 7.4e-11 72.0 94 40.4
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 1.6e-10 70.9 78 46.2
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.6e-10 70.9 75 46.7
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 4.8e-10 69.3 92 40.2
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 6.3e-10 68.9 92 40.2
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 6.3e-10 68.9 141 36.2
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 8.2e-10 68.6 94 42.6
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 1.4e-09 67.8 98 42.9
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 2.4e-09 67.0 78 46.2
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 2.4e-09 67.0 235 34.5
AUR62032040 Chenopodium quinoa HOM05D021339 ORTHO05D008066 5.3e-09 65.9 240 30.4
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 6.9e-09 65.5 95 41.1
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 9.0e-09 65.1 38 76.3
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 2.0e-08 63.9 94 36.2
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 4.5e-08 62.8 257 26.8
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 7.6e-08 62.0 231 26.4
AUR62032712 Chenopodium quinoa HOM05D021339 ORTHO05D008066 7.6e-08 62.0 243 30.9
Ah.12g059940 Amaranthus hybridus HOM05D021339 ORTHO05D008066 1.7e-07 60.8 211 29.4
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 1.7e-07 60.8 232 24.1
Carub.0006s0104 Capsella rubella HOM05D012592 ORTHO05D008066 8.4e-07 58.5 236 27.5
CDE02G1216 Ceratophyllum demersum HOM05D007762 ORTHO05D008066 8.4e-07 58.5 259 25.9
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 1.1e-06 58.2 233 29.2
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 3.2e-06 56.6 56 55.4
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 4.2e-06 56.2 233 28.8
CsaV3_4G025130 Cucumis sativus L. HOM05D041730 ORTHO05D034779 4.2e-06 56.2 89 41.6
MELO3C003141.2 Cucumis melo HOM05D041730 ORTHO05D034779 9.3e-06 55.1 89 39.3


User provided reference genes

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