Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.3e-213 746.1 387 100.0
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 9.0e-194 680.2 371 94.9
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 4.8e-155 551.6 377 77.7
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.0e-152 543.9 377 77.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 8.2e-147 524.2 376 75.3
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 5.4e-130 468.4 379 68.3
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.5e-129 465.7 381 66.4
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.2e-123 446.4 377 64.7
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 1.9e-122 443.4 321 71.0
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 1.9e-122 443.4 378 63.2
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 7.8e-121 438.0 383 61.9
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 6.6e-120 434.9 378 61.9
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 6.6e-120 434.9 376 63.3
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 1.1e-119 434.1 375 63.2
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.5e-119 433.7 378 62.2
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.1e-117 427.6 386 62.2
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.3e-117 426.4 378 60.8
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 5.2e-117 425.2 381 61.4
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 8.9e-117 424.5 361 62.6
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 4.4e-116 422.2 380 61.3
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.9e-115 419.5 397 60.5
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.1e-114 417.5 383 61.1
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.4e-114 416.4 386 61.4
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 2.3e-112 409.8 381 60.6
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.3e-111 404.8 386 60.1
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 9.5e-111 404.4 377 58.9
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 5.2e-109 398.7 384 59.4
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 1.2e-108 397.5 390 58.5
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 5.8e-108 395.2 382 58.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.6e-105 387.1 362 59.4
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 6.0e-105 385.2 385 57.1
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 3.0e-104 382.9 377 55.7
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 5.1e-104 382.1 324 62.3
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.5e-103 380.6 377 55.7
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.9e-103 380.2 380 56.3
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 7.3e-103 378.3 384 57.3
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 9.5e-103 377.9 347 59.9
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.2e-102 377.5 383 59.3
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 1.2e-100 370.9 378 55.0
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 2.0e-100 370.2 370 55.1
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 3.8e-99 365.9 351 57.3
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.1e-98 364.4 381 55.1
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.1e-98 364.4 382 53.7
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 4.6e-97 359.0 384 53.4
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.3e-96 357.5 333 58.6
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.1e-95 354.4 410 52.2
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.3e-95 352.8 345 57.4
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 9.6e-95 351.3 371 52.8
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 2.1e-94 350.1 372 54.0
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 4.7e-94 349.0 337 56.4
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.1e-93 347.8 331 55.6
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.8e-93 347.1 343 56.9
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.2e-92 344.4 376 52.7
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 4.4e-92 342.4 377 52.0
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 7.6e-92 341.7 374 53.7
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.1e-90 337.8 385 51.2
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.4e-90 337.4 372 51.9
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 4.2e-90 335.9 371 50.7
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 5.4e-90 335.5 379 53.3
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 9.3e-90 334.7 370 50.8
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 1.6e-89 334.0 378 50.3
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 2.1e-89 333.6 371 51.8
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.1e-89 333.6 371 50.9
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 6.0e-89 332.0 371 50.7
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 6.0e-89 332.0 382 50.5
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 7.8e-89 331.6 379 52.5
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.0e-88 331.3 326 55.5
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.3e-88 330.9 373 50.4
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.3e-88 330.9 352 53.4
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 2.3e-88 330.1 378 49.2
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 5.1e-88 328.9 365 51.8
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 8.7e-88 328.2 373 49.3
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 2.5e-87 326.6 385 48.8
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 4.3e-87 325.9 376 49.5
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 5.6e-87 325.5 375 48.8
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 5.6e-87 325.5 378 49.7
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 1.5e-84 317.4 384 48.4
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.4e-84 316.2 409 46.0
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 4.9e-83 312.4 334 53.3
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.4e-82 310.8 353 54.7
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 9.3e-82 308.1 374 48.1
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 1.8e-80 303.9 337 49.9
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 1.1e-77 294.7 342 49.7
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 1.5e-76 290.8 384 45.1
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 9.9e-76 288.1 384 45.3
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 4.9e-75 285.8 384 44.5
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 2.3e-72 276.9 258 58.1
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 3.9e-72 276.2 389 43.4
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 2.5e-71 273.5 373 44.8
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.9e-66 257.3 287 48.8
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.7e-65 253.4 331 43.2
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.8e-64 250.8 156 80.1
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 2.5e-63 246.9 383 40.5
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 5.7e-63 245.7 309 47.2
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 3.3e-55 219.9 358 40.8
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.2e-51 207.2 139 72.7
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 5.5e-50 202.6 370 37.0
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 9.4e-50 201.8 326 39.9
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 5.3e-45 186.0 245 46.9
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.2e-44 184.9 189 52.4
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.5e-44 184.5 283 43.8
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-43 181.4 239 44.4
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.5e-42 177.2 120 70.8
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 5.5e-42 176.0 337 33.8
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 4.8e-38 162.9 344 34.6
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 5.5e-34 149.4 323 32.5
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 6.1e-33 146.0 323 31.9
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.0e-32 145.2 128 65.6
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.8e-32 144.4 173 51.4
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.1e-26 125.2 168 46.4
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.2e-25 121.7 97 59.8
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 2.4e-21 107.5 379 26.9
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 5.5e-18 96.3 239 34.3
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.8e-17 94.0 102 51.0
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 2.0e-12 77.8 62 64.5
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 2.5e-10 70.9 75 50.7
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 2.6e-07 60.8 163 32.5


User provided reference genes

Program Settings