Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.4e-28 127.1 58 100.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.5e-20 102.1 45 100.0
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 5.4e-18 93.6 44 95.5
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.5e-15 82.8 44 84.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.1e-14 81.6 40 87.5
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-14 81.6 44 81.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.8e-14 81.3 44 79.5
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.3e-13 78.2 43 81.4
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 4.0e-13 77.4 44 77.3
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 8.9e-13 76.3 45 75.6
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.9e-13 76.3 57 63.2
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.5e-12 75.5 43 79.1
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.0e-12 75.1 45 73.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.0e-12 75.1 42 81.0
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.6e-12 74.7 44 72.7
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 5.8e-12 73.6 43 76.7
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 7.5e-12 73.2 43 74.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 7.5e-12 73.2 44 75.0
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 7.5e-12 73.2 43 72.1
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 9.8e-12 72.8 43 74.4
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.3e-11 72.4 43 72.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.3e-11 72.4 43 76.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.3e-11 72.4 43 69.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.7e-11 72.0 43 74.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.2e-11 71.6 43 72.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.2e-11 71.6 43 67.4
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.2e-11 71.6 42 73.8
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.9e-11 71.2 43 69.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.7e-11 70.9 42 71.4
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.7e-11 70.9 42 71.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 8.3e-11 69.7 43 69.8
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.3e-11 69.7 44 68.2
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.1e-10 69.3 41 73.2
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.4e-10 68.9 43 69.8
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.9e-10 68.6 42 71.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.9e-10 68.6 43 69.8
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.9e-10 68.6 43 69.8
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.9e-10 68.6 43 72.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.4e-10 68.2 43 67.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.4e-10 68.2 43 67.4
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.4e-10 68.2 43 69.8
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.4e-10 68.2 43 69.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.4e-10 68.2 43 69.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.2e-10 67.8 43 62.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-10 67.8 44 70.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.2e-10 67.8 45 66.7
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.2e-10 67.8 43 69.8
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 4.1e-10 67.4 43 69.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 4.1e-10 67.4 43 67.4
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 5.4e-10 67.0 39 69.2
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 5.4e-10 67.0 39 74.4
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.1e-10 66.6 39 76.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.1e-10 66.6 40 67.5
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 7.1e-10 66.6 43 62.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.1e-10 66.6 43 65.1
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 7.1e-10 66.6 43 67.4
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.2e-09 65.9 39 69.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.6e-09 65.5 43 65.1
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-09 65.5 39 71.8
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-09 65.5 40 67.5
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.6e-09 65.5 40 75.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.6e-09 65.5 40 75.0
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.7e-09 64.7 40 65.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.7e-09 64.7 45 55.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.6e-09 63.9 43 58.1
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.6e-09 63.9 43 65.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.6e-09 63.9 43 65.1
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.0e-09 63.5 43 69.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 6.0e-09 63.5 43 60.5
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.0e-08 62.8 40 62.5
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-08 62.4 39 64.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-08 62.4 50 56.0
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-08 62.0 43 58.1
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.7e-08 62.0 43 58.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.7e-08 62.0 39 64.1
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.7e-08 62.0 39 64.1
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.3e-08 61.6 43 55.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.3e-08 61.6 39 69.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.0e-08 61.2 43 62.8
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.9e-08 60.8 43 60.5
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 3.9e-08 60.8 43 53.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 5.1e-08 60.5 42 59.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 5.1e-08 60.5 36 75.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 5.1e-08 60.5 43 58.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 6.6e-08 60.1 39 69.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 6.6e-08 60.1 42 64.3
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.6e-08 60.1 40 60.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.6e-08 59.7 43 60.5
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.6e-08 59.7 43 60.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 8.6e-08 59.7 37 67.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 8.6e-08 59.7 45 57.8
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.1e-07 59.3 36 72.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 1.1e-07 59.3 40 60.0
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.1e-07 59.3 43 55.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.5e-07 58.9 36 72.2
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.5e-07 58.9 35 68.6
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.9e-07 58.5 42 59.5
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.9e-07 58.5 39 61.5
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.9e-07 58.5 43 51.2
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.5e-07 58.2 35 68.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 3.3e-07 57.8 35 65.7
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.3e-07 57.8 35 65.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 3.3e-07 57.8 35 65.7
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 4.3e-07 57.4 35 65.7
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.6e-07 57.0 44 52.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 7.3e-07 56.6 43 58.1
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 9.5e-07 56.2 44 56.8
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 9.5e-07 56.2 42 59.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 9.5e-07 56.2 37 62.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 9.5e-07 56.2 39 59.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 9.5e-07 56.2 43 58.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.2e-06 55.8 42 57.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.2e-06 55.8 39 61.5
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.6e-06 55.5 36 66.7
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-06 55.5 42 54.8
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.6e-06 55.5 39 61.5
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 2.1e-06 55.1 37 64.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.8e-06 54.7 36 69.4
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 8.1e-06 53.1 42 54.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 8.1e-06 53.1 42 54.8


User provided reference genes

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