Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-35 151.4 74 100.0
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-23 112.5 63 85.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.6e-22 107.5 56 91.1
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.3e-21 105.9 56 91.1
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-19 99.0 56 83.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.0e-18 94.4 56 78.6
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.3e-18 94.0 56 78.6
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 5.3e-18 94.0 56 78.6
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 9.0e-18 93.2 56 80.4
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.6e-17 91.7 56 76.8
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-17 91.7 56 80.4
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.4e-17 91.3 56 76.8
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 7.6e-17 90.1 56 76.8
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 9.9e-17 89.7 56 76.8
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.9e-16 88.2 56 73.2
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.8e-16 87.8 47 91.5
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.9e-16 87.4 56 76.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.4e-16 87.0 56 73.2
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 8.4e-16 86.7 56 71.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 8.4e-16 86.7 56 73.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-15 85.9 56 73.2
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.9e-15 85.5 56 75.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.9e-15 85.5 56 75.0
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.9e-15 85.5 56 71.4
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.2e-15 84.7 56 75.0
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 3.2e-15 84.7 56 73.2
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.2e-15 84.7 56 71.4
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.2e-15 84.7 56 67.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 3.2e-15 84.7 56 71.4
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 4.2e-15 84.3 56 71.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.2e-15 84.3 56 71.4
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.2e-15 84.3 56 71.4
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.4e-15 84.0 56 69.6
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 9.3e-15 83.2 56 69.6
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.2e-14 82.8 56 69.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.2e-14 82.8 56 66.1
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-14 82.4 56 69.6
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.6e-14 82.4 56 69.6
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-14 82.0 56 69.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.7e-14 81.6 56 71.4
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.7e-14 81.6 56 67.9
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.7e-14 81.6 56 71.4
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.6e-14 80.9 56 67.9
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.6e-14 80.9 56 67.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.0e-13 79.7 56 71.4
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.0e-13 79.7 56 66.1
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.0e-13 79.7 56 64.3
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.8e-13 79.0 56 67.9
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.8e-13 79.0 56 67.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.3e-13 78.6 56 71.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.3e-13 78.6 56 67.9
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.3e-13 78.6 56 69.6
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.0e-13 78.2 56 64.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.0e-13 78.2 56 64.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.9e-13 77.8 56 67.9
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 5.1e-13 77.4 56 66.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.7e-13 77.0 56 66.1
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.7e-13 77.0 56 66.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.7e-13 77.0 56 66.1
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 6.7e-13 77.0 56 69.6
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 8.7e-13 76.6 56 64.3
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 8.7e-13 76.6 56 66.1
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.5e-12 75.9 56 64.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.5e-12 75.9 56 64.3
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.9e-12 75.5 56 69.6
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.9e-12 75.5 57 71.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.5e-12 75.1 57 64.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.5e-12 75.1 56 64.3
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.5e-12 75.1 56 67.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.5e-12 75.1 56 67.9
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.3e-12 74.7 56 66.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 3.3e-12 74.7 56 64.3
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.3e-12 74.7 56 69.6
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 4.3e-12 74.3 56 66.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.3e-12 74.3 56 60.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 7.4e-12 73.6 57 66.7
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 9.6e-12 73.2 56 62.5
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-11 72.8 50 68.0
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.6e-11 72.4 42 78.6
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.1e-11 72.0 56 64.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.1e-11 72.0 56 64.3
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.8e-11 71.6 57 63.2
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.7e-11 71.2 56 64.3
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.2e-11 70.5 56 62.5
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.2e-11 70.5 57 63.2
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.1e-11 70.1 56 64.3
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 8.1e-11 70.1 57 63.2
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 8.1e-11 70.1 56 66.1
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.1e-10 69.7 56 60.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.1e-10 69.7 56 62.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.4e-10 69.3 56 64.3
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.4e-10 69.3 57 59.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.4e-10 69.3 56 64.3
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.8e-10 68.9 57 61.4
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.4e-10 68.6 71 56.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 4.0e-10 67.8 56 58.9
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.0e-10 67.8 60 56.7
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 4.0e-10 67.8 50 68.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 4.0e-10 67.8 57 57.9
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 5.3e-10 67.4 68 54.4
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 5.3e-10 67.4 54 61.1
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 5.3e-10 67.4 56 60.7
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 5.3e-10 67.4 56 60.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 6.9e-10 67.0 56 58.9
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 9.0e-10 66.6 54 64.8
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 9.0e-10 66.6 57 57.9
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.5e-09 65.9 56 58.9
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 2.0e-09 65.5 45 68.9
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.6e-09 65.1 57 56.1
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.4e-09 64.7 56 57.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.4e-09 64.7 57 57.9
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.5e-09 64.3 57 57.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.5e-09 64.3 57 57.9
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 5.8e-09 63.9 86 45.3
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 1.0e-08 63.2 40 77.5
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 3.8e-08 61.2 56 57.1
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 8.4e-08 60.1 42 71.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.1e-06 55.5 60 46.7


User provided reference genes

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