Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 5.6e-276 953.7 516 100.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.9e-256 888.3 519 93.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.9e-179 632.5 476 75.2
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 4.8e-134 482.3 499 58.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.5e-131 471.9 512 60.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.9e-130 470.3 519 57.4
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.8e-128 463.8 508 57.5
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.2e-126 456.8 506 56.5
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.1e-125 454.5 509 58.9
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.2e-123 446.8 511 55.0
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 5.0e-123 445.7 508 54.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.0e-123 445.7 511 54.8
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 6.5e-123 445.3 515 55.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 3.2e-122 443.0 501 55.1
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.6e-121 440.7 509 57.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 6.1e-121 438.7 511 53.8
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.3e-120 436.8 511 54.0
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.6e-119 433.3 510 54.1
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.6e-119 433.3 515 54.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 5.7e-119 432.2 499 56.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.7e-118 430.6 505 52.3
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.2e-118 430.3 501 55.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 8.2e-118 428.3 501 52.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 7.7e-116 421.8 518 54.1
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-115 420.6 508 54.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.9e-115 419.9 515 54.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.5e-114 416.8 507 56.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.5e-114 416.8 512 55.3
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.6e-113 414.1 506 55.5
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-112 410.6 511 52.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.7e-112 408.7 530 50.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.4e-109 401.0 510 51.6
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 7.0e-109 398.7 530 49.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 9.1e-109 398.3 505 49.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 9.1e-109 398.3 513 49.7
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.6e-108 396.7 453 57.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.0e-107 392.5 513 53.0
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 6.5e-107 392.1 509 49.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 6.5e-107 392.1 509 51.3
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 8.5e-107 391.7 498 52.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-106 391.0 535 48.4
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-106 389.0 518 49.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 8.0e-105 385.2 505 49.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-104 384.0 521 50.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.7e-103 379.0 518 49.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.3e-102 375.2 517 51.1
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.8e-101 374.0 506 49.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.1e-98 364.8 517 49.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.5e-98 364.4 423 56.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.9e-98 364.0 445 54.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.6e-97 359.8 530 46.4
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.6e-97 359.8 505 46.3
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.4e-96 357.8 506 50.4
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.2e-96 355.9 505 45.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 9.8e-95 351.7 511 48.3
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.3e-94 351.3 443 52.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-94 350.9 513 47.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.2e-94 350.5 516 48.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.1e-93 346.3 511 47.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.1e-93 345.1 506 48.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 3.5e-92 343.2 430 51.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 4.5e-92 342.8 386 52.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 8.6e-91 338.6 519 44.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.2e-90 336.3 509 44.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.0e-88 331.6 507 45.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.2e-88 329.3 498 45.6
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.9e-88 328.6 511 46.4
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 8.9e-88 328.6 498 50.0
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 8.3e-86 322.0 516 45.7
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 8.3e-86 322.0 506 44.9
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.1e-85 320.1 506 43.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.2e-84 318.2 516 44.2
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.5e-84 316.6 506 48.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 7.8e-84 315.5 523 44.6
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.0e-83 315.1 523 44.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 3.9e-83 313.2 471 48.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 5.0e-83 312.8 496 45.2
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.5e-82 308.5 505 44.2
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.8e-81 307.0 521 43.8
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 3.6e-81 306.6 516 43.6
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.0e-80 305.1 502 45.6
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-80 305.1 408 46.8
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.0e-79 300.8 509 42.4
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 4.4e-79 299.7 511 42.7
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.4e-77 294.7 496 42.5
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.9e-77 294.3 506 45.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 7.0e-77 292.4 526 42.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.0e-75 287.0 524 41.6
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.2e-73 281.6 467 47.1
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.4e-72 278.1 512 42.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.8e-72 277.7 476 42.0
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.3e-72 277.3 493 43.8
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 6.8e-72 275.8 505 45.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-71 275.0 535 41.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.0e-71 274.2 508 39.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 7.5e-71 272.3 517 43.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 9.8e-71 271.9 471 45.2
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-69 268.5 538 40.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.1e-69 268.5 517 42.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 5.4e-69 266.2 521 42.4
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 7.0e-69 265.8 440 45.0
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 7.8e-68 262.3 527 41.9
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.3e-67 260.8 439 44.6
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.1e-66 258.5 450 44.7
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.5e-66 255.4 496 41.5
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.2e-65 252.7 456 42.1
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.5e-63 248.1 447 41.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.6e-63 247.3 463 39.7
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-63 246.9 435 42.1
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.9e-62 243.8 423 43.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 4.9e-62 243.0 433 40.6
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.4e-61 241.5 432 41.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.9e-61 241.1 426 41.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.4e-61 240.7 431 41.1
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 9.2e-61 238.8 429 42.2
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-60 238.4 428 40.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 7.8e-60 235.7 448 38.6
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.0e-59 235.3 448 38.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.3e-59 235.0 448 38.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.3e-58 230.3 506 39.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.4e-56 224.9 510 39.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.0e-56 223.4 390 41.8
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 4.4e-55 219.9 529 37.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-54 218.4 454 41.2
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.4e-53 214.9 452 38.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 7.1e-53 212.6 460 37.8
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-52 211.8 459 40.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 7.8e-52 209.1 257 50.6
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.0e-51 207.2 477 37.5
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.6e-50 203.0 405 39.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 6.2e-49 199.5 442 39.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.1e-48 198.7 385 38.4
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.1e-48 197.2 509 36.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 5.3e-48 196.4 365 39.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-46 191.8 455 38.0
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.2e-46 191.0 366 38.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-45 188.7 473 34.2
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.4e-45 187.6 502 34.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-44 183.3 346 39.0
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.0e-43 182.2 520 35.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 9.3e-37 159.1 202 51.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.6e-36 156.8 453 34.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.0e-36 156.4 145 61.4
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.9e-34 151.4 179 48.6
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.0e-32 143.7 284 39.8
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 5.3e-32 143.3 115 63.5
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.4e-29 135.2 498 32.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.2e-29 134.0 138 58.0
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 7.1e-29 132.9 137 56.9
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.2e-28 132.1 221 44.3
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-28 131.3 149 57.7
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 4.6e-28 130.2 430 29.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.8e-24 118.2 292 38.4
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 5.8e-23 113.2 187 45.5
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 4.6e-20 103.6 529 27.8
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.4e-16 91.3 524 27.1
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.3e-14 85.5 229 32.3
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.7e-14 85.1 106 41.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.8e-14 84.0 215 32.6
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.5e-14 83.2 270 27.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.2e-13 80.5 113 42.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 4.2e-13 80.5 373 28.7
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.6e-12 77.4 130 38.5
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.6e-12 77.4 407 28.3
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 4.6e-12 77.0 222 34.2
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.9e-12 76.3 212 32.1
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.0e-11 75.9 212 30.2
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.0e-11 75.9 379 28.8
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.4e-11 75.5 58 60.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-10 72.4 72 50.0
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 3.3e-10 70.9 118 39.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 3.3e-10 70.9 215 29.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.7e-10 69.3 140 35.7
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.3e-09 66.6 48 64.6
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 2.4e-08 64.7 135 37.0
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.0e-07 61.6 68 48.5
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-06 58.2 89 43.8


User provided reference genes

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