Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017185 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.6e-115 418.7 205 100.0
Haze_01604 Corylus avellana HOM05D002400 ORTHO05D002568 6.6e-95 350.9 188 92.6
Haze_21068 Corylus avellana HOM05D002400 ORTHO05D002568 1.5e-86 323.2 212 78.3
Cfa000125 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.9e-82 308.9 191 79.6
Cfa012832 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.2e-80 303.5 188 78.7
Haze_06898 Corylus avellana HOM05D002400 ORTHO05D002568 1.2e-75 287.0 188 76.1
Cfa017622 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.0e-68 261.9 132 93.9
Cfa017157 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.3e-63 246.9 188 70.2
Haze_21106 Corylus avellana HOM05D002400 ORTHO05D002568 5.3e-60 235.0 189 66.1
Cfa017093 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.3e-55 220.3 182 63.2
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.0e-26 124.4 179 38.5
Cfa000126 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.5e-25 119.8 80 76.2
vmacro12123 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 6.8e-23 111.7 181 37.0
RcHm_v2.0_Chr2g0157031 Rosa chinensis HOM05D002400 ORTHO05D002568 1.0e-18 97.8 159 37.7
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-18 97.4 159 37.7
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 3.8e-18 95.9 146 35.6
RcHm_v2.0_Chr3g0474131 Rosa chinensis HOM05D002400 ORTHO05D002568 1.9e-17 93.6 162 32.7
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 7.2e-17 91.7 143 37.8
Dinv02731 Davidia involucrata HOM05D002400 ORTHO05D002568 1.2e-16 90.9 168 37.5
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-16 90.9 157 36.9
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-16 90.1 156 35.3
FvH4_6g18953 Fragaria vesca HOM05D002400 ORTHO05D002568 3.6e-16 89.4 137 39.4
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 8.0e-16 88.2 158 36.1
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.8e-15 87.0 190 34.2
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 2.3e-15 86.7 179 33.0
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 3.0e-15 86.3 157 35.7
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 3.0e-15 86.3 148 36.5
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 4.0e-15 85.9 159 32.7
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 5.2e-15 85.5 149 34.2
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 1.5e-14 84.0 154 33.8
Cfa005419 Carpinus fangiana HOM05D002400 ORTHO05D002568 5.7e-14 82.0 145 37.2
FAN09G1471 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.7e-14 82.0 187 31.0
Dinv02730 Davidia involucrata HOM05D002400 ORTHO05D002568 1.3e-13 80.9 163 31.9
MD12G1026400 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-13 80.9 185 30.8
FvH4_6g19020 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-13 80.5 187 31.0
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.7e-13 80.5 190 31.6
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-13 80.5 182 30.8
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-13 80.5 155 32.3
CiPaw.12G069200 Carya illinoinensis HOM05D002400 ORTHO05D002568 2.2e-13 80.1 143 36.4
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 2.8e-13 79.7 155 32.3
Cfa005420 Carpinus fangiana HOM05D002400 ORTHO05D002568 3.7e-13 79.3 190 33.2
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.9e-13 79.0 155 32.3
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 4.9e-13 79.0 155 31.6
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 6.3e-13 78.6 161 32.9
MD00G1221800 Malus domestica HOM05D002400 ORTHO05D002568 8.3e-13 78.2 170 31.8
Prupe.7G108700 Prunus persica HOM05D002400 ORTHO05D002568 1.1e-12 77.8 187 32.1
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-12 77.4 158 36.7
RcHm_v2.0_Chr3g0475381 Rosa chinensis HOM05D002400 ORTHO05D002568 1.4e-12 77.4 127 34.6
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-12 76.3 155 31.0
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-12 76.3 155 31.0
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.4e-12 75.5 161 32.3
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.0e-12 75.1 161 32.3
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 7.0e-12 75.1 159 30.8
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 9.2e-12 74.7 185 29.7
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.2e-12 74.7 161 32.3
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.2e-12 74.7 161 32.3
Prupe.7G104900 Prunus persica HOM05D002400 ORTHO05D002568 1.6e-11 73.9 186 30.6
MD14G1025100 Malus domestica HOM05D002400 ORTHO05D002568 2.0e-11 73.6 167 30.5
Cfa005946 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.7e-11 73.2 150 34.7
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 4.5e-11 72.4 134 33.6
MD14G1025200 Malus domestica HOM05D002400 ORTHO05D002568 5.9e-11 72.0 205 31.2
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-10 70.9 161 31.7
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 1.7e-10 70.5 158 32.9
FAN18G0566 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.3e-10 70.1 175 30.9
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 2.3e-10 70.1 187 31.6
RcHm_v2.0_Chr3g0481121 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-10 69.7 159 35.2
Cfa005943 Carpinus fangiana HOM05D002400 ORTHO05D002568 3.8e-10 69.3 145 35.9
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 1.1e-09 67.8 152 30.3
TWI34G2021 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 1.1e-09 67.8 115 40.9
Haze_04775 Corylus avellana HOM05D002400 ORTHO05D002568 1.9e-09 67.0 143 33.6
Prupe.6G311700 Prunus persica HOM05D002400 ORTHO05D002568 3.3e-09 66.2 171 31.0
RcHm_v2.0_Chr3g0474011 Rosa chinensis HOM05D002400 ORTHO05D002568 3.3e-09 66.2 109 36.7
Haze_16779 Corylus avellana HOM05D002400 ORTHO05D002568 4.3e-09 65.9 170 31.2
RcHm_v2.0_Chr7g0217281 Rosa chinensis HOM05D002400 ORTHO05D002568 4.3e-09 65.9 160 33.1
FAN14G5626 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.5e-09 64.7 188 31.9
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 9.5e-09 64.7 181 29.8
Dinv02729 Davidia involucrata HOM05D002400 ORTHO05D002568 1.2e-08 64.3 136 33.8
FAN06G1151 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-08 62.8 134 32.8
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 3.6e-08 62.8 112 34.8
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 8.0e-08 61.6 140 30.0
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.0e-08 61.6 149 30.2
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-07 60.8 140 30.0
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-07 60.5 140 30.0
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-07 60.5 142 29.6
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 1.8e-07 60.5 189 27.0
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-07 59.7 158 31.0
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 3.0e-07 59.7 115 33.9
TWI81G0137 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 3.0e-07 59.7 112 33.0
TWI60G1609 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 4.0e-07 59.3 112 32.1
MD12G1202000 Malus domestica HOM05D002400 ORTHO05D002568 5.2e-07 58.9 146 32.9
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 6.8e-07 58.5 114 36.8
Ciclev10010183m.g Citrus clementina HOM05D000051 ORTHO05D000015 8.9e-07 58.2 98 37.8
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 8.9e-07 58.2 159 30.2
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.9e-07 58.2 159 30.2
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 8.9e-07 58.2 156 29.5
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 1.2e-06 57.8 89 36.0
Ciclev10010758m.g Citrus clementina HOM05D000051 ORTHO05D000015 2.0e-06 57.0 92 39.1
RcHm_v2.0_Chr7g0193261 Rosa chinensis HOM05D002400 ORTHO05D002568 2.0e-06 57.0 135 34.1
Ciclev10009109m.g Citrus clementina HOM05D000051 ORTHO05D000015 2.6e-06 56.6 120 35.0
FvH4_6g19370 Fragaria vesca HOM05D002400 ORTHO05D002568 3.4e-06 56.2 173 28.3
Thecc.04G074200 Theobroma cacao HOM05D020315 ORTHO05D019057 3.4e-06 56.2 131 35.1
FAN14G2794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.4e-06 55.8 140 28.6
PSO063G1111 Papaver somniferum HOM05D000051 ORTHO05D000015 4.4e-06 55.8 86 36.0
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 5.7e-06 55.5 148 25.7
Sabra06G0191600 Salix brachista HOM05D002400 ORTHO05D002568 5.7e-06 55.5 88 38.6
Ciclev10008918m.g Citrus clementina HOM05D000051 ORTHO05D000015 7.5e-06 55.1 93 36.6
Medtr2g047858 Medicago truncatula HOM05D000312 ORTHO05D000221 7.5e-06 55.1 114 36.0
Nitab4.5_0000692g0150 Nicotiana tabacum HOM05D000051 ORTHO05D000015 7.5e-06 55.1 91 36.3
CAN.G397.63 Capsicum annuum HOM05D000051 ORTHO05D000015 9.8e-06 54.7 86 37.2
FAN14G5775 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.8e-06 54.7 173 27.7


User provided reference genes

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