Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017182 Carpinus fangiana HOM05D004241 ORTHO05D006031 7.5e-194 680.2 322 100.0
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 8.5e-97 357.8 313 63.9
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 2.1e-95 353.2 184 92.9
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 4.0e-86 322.4 163 96.9
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 8.8e-86 321.2 163 95.7
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 1.5e-85 320.5 163 94.5
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 1.5e-85 320.5 163 95.7
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 2.0e-85 320.1 163 93.9
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 3.4e-85 319.3 164 95.1
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 3.4e-85 319.3 163 96.3
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 4.4e-85 318.9 163 96.3
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 4.4e-85 318.9 163 95.1
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 5.7e-85 318.5 163 95.1
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 5.7e-85 318.5 165 93.3
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 5.7e-85 318.5 163 95.1
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 7.5e-85 318.2 163 94.5
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 7.5e-85 318.2 163 95.7
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 7.5e-85 318.2 163 93.9
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 7.5e-85 318.2 168 90.5
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 9.8e-85 317.8 162 95.1
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 9.8e-85 317.8 163 94.5
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 9.8e-85 317.8 163 95.1
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 1.7e-84 317.0 163 93.3
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 1.7e-84 317.0 163 95.7
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 1.7e-84 317.0 163 93.9
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 1.7e-84 317.0 163 92.6
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 2.2e-84 316.6 163 93.3
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 3.7e-84 315.8 163 93.9
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 3.7e-84 315.8 163 93.9
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 3.7e-84 315.8 163 93.9
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 4.8e-84 315.5 164 93.3
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 4.8e-84 315.5 163 93.9
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 8.3e-84 314.7 163 93.3
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 8.3e-84 314.7 163 94.5
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.1e-83 314.3 163 92.6
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.4e-83 313.9 163 93.9
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 1.4e-83 313.9 163 93.9
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 1.4e-83 313.9 165 92.1
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 1.4e-83 313.9 163 93.3
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.8e-83 313.5 165 91.5
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 1.8e-83 313.5 163 93.9
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 2.4e-83 313.2 163 92.6
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 2.4e-83 313.2 163 91.4
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 2.4e-83 313.2 163 92.6
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 2.4e-83 313.2 163 92.6
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 3.1e-83 312.8 163 91.4
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 3.1e-83 312.8 163 93.3
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 4.1e-83 312.4 163 93.3
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 4.1e-83 312.4 163 92.6
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 4.1e-83 312.4 163 92.6
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 5.4e-83 312.0 163 92.6
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 5.4e-83 312.0 163 92.6
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 7.0e-83 311.6 163 93.3
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 7.0e-83 311.6 163 93.3
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 9.1e-83 311.2 163 92.6
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 1.2e-82 310.8 163 91.4
Glyma.16G098000 Glycine max HOM05D004241 ORTHO05D006031 1.2e-82 310.8 163 92.6
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 1.2e-82 310.8 163 92.0
FAN14G2181 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.6e-82 310.5 163 92.0
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 2.0e-82 310.1 163 92.0
FAN05G3727 Fragaria x ananassa HOM05D004241 ORTHO05D006031 2.0e-82 310.1 163 91.4
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 2.0e-82 310.1 163 92.0
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 2.0e-82 310.1 163 91.4
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 3.5e-82 309.3 163 92.0
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 3.5e-82 309.3 163 92.0
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 3.5e-82 309.3 163 91.4
Solyc09g014760.4 Solanum lycopersicum HOM05D004241 ORTHO05D006031 3.5e-82 309.3 163 92.0
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 4.5e-82 308.9 163 91.4
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 4.5e-82 308.9 163 91.4
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 5.9e-82 308.5 163 90.8
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 1.0e-81 307.8 222 71.6
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 1.0e-81 307.8 163 91.4
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.3e-81 307.4 199 77.4
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 1.3e-81 307.4 199 77.4
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 1.7e-81 307.0 273 63.0
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 1.7e-81 307.0 163 90.8
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 2.2e-81 306.6 163 90.8
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 2.2e-81 306.6 163 90.8
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 2.9e-81 306.2 163 90.2
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 2.9e-81 306.2 163 90.2
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 2.9e-81 306.2 163 90.2
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 6.5e-81 305.1 163 89.0
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 6.5e-81 305.1 163 89.6
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 6.5e-81 305.1 163 89.6
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 8.5e-81 304.7 163 88.3
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 8.5e-81 304.7 163 88.3
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 1.1e-80 304.3 163 89.6
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 1.5e-80 303.9 163 89.6
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 1.5e-80 303.9 163 89.6
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 1.5e-80 303.9 163 89.6
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 1.5e-80 303.9 163 89.6
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 1.9e-80 303.5 164 89.0
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 2.5e-80 303.1 163 88.3
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.5e-80 303.1 163 89.0
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 2.5e-80 303.1 163 89.0
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 3.2e-80 302.8 163 90.2
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 4.2e-80 302.4 163 88.3
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 7.2e-80 301.6 163 88.3
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 9.4e-80 301.2 164 87.8
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.2e-79 300.8 163 87.1
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 2.7e-79 299.7 163 88.3
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 2.7e-79 299.7 163 87.7
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.0e-78 297.7 163 89.0
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 2.3e-78 296.6 163 85.9
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 4.0e-78 295.8 163 85.9
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 8.8e-78 294.7 163 85.3
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 2.0e-77 293.5 191 76.4
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 1.7e-76 290.4 189 77.8
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 2.8e-76 289.7 189 77.2
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 3.7e-76 289.3 177 81.4
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 4.9e-76 288.9 147 95.2
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 2.4e-75 286.6 163 82.8
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 2.7e-74 283.1 225 66.2
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 1.3e-73 280.8 152 90.8
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 6.6e-73 278.5 163 81.0
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 6.6e-73 278.5 231 65.8
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 2.5e-72 276.6 163 78.5
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 2.5e-72 276.6 163 79.1
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 4.3e-72 275.8 169 79.3
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 5.6e-72 275.4 181 75.1
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 5.6e-72 275.4 169 78.1
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 6.8e-70 268.5 137 95.6
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 8.9e-70 268.1 180 72.2
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 2.0e-69 266.9 157 85.4
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 9.8e-69 264.6 169 78.1
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.1e-67 261.2 157 83.4
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 3.5e-66 256.1 153 80.4
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 2.1e-63 246.9 147 78.9
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 3.6e-63 246.1 136 85.3
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 5.2e-62 242.3 162 72.2
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 6.4e-60 235.3 164 68.3
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 2.0e-58 230.3 122 86.1
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 3.4e-53 213.0 197 58.9
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 9.8e-53 211.5 163 71.2
arahy.Tifrunner.gnm1.ann1.X8HB46 Arachis hypogaea HOM05D004241 ORTHO05D026893 1.6e-47 194.1 98 94.9
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 2.6e-45 186.8 171 63.2
CBR_g38410 Chara braunii HOM05D004241 ORTHO05D006031 1.0e-41 174.9 193 52.3
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 3.2e-35 153.3 124 66.1
arahy.Tifrunner.gnm1.ann1.XTCX6A Arachis hypogaea HOM05D004241 ORTHO05D006031 3.5e-26 123.2 59 96.6
BraA07t28631Z Brassica rapa HOM05D004241 ORTHO05D018769 9.0e-22 108.6 129 49.6
A09p02030 Brassica napus HOM05D004241 ORTHO05D018769 1.2e-21 108.2 125 52.0
C04p30330 Brassica napus HOM05D004241 ORTHO05D026893 1.2e-21 108.2 74 70.3
BolC4t24566H Brassica oleracea HOM05D004241 ORTHO05D026893 1.2e-21 108.2 74 70.3
BraA02t07759Z Brassica rapa HOM05D004241 ORTHO05D018769 2.6e-21 107.1 129 49.6
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 5.8e-21 105.9 49 98.0
C04p53880 Brassica napus HOM05D004241 ORTHO05D018769 2.3e-17 94.0 110 50.9
C09p54590 Brassica napus HOM05D004241 ORTHO05D018769 2.3e-17 94.0 110 50.9
BolC1t02697H Brassica oleracea HOM05D004241 ORTHO05D018769 2.3e-17 94.0 110 50.9
A02p27320 Brassica napus HOM05D004241 ORTHO05D018769 4.8e-15 86.3 124 46.0
BolC8t51994H Brassica oleracea HOM05D002167 ORTHO05D016814 1.8e-14 84.3 100 46.0
BcaC05g27019 Brassica carinata HOM05D002167 ORTHO05D016814 4.0e-14 83.2 100 45.0
C08p36750 Brassica napus HOM05D002167 ORTHO05D016814 4.0e-14 83.2 97 46.4
BolC5t31601H Brassica oleracea HOM05D002167 ORTHO05D016814 4.0e-14 83.2 100 45.0
C05p28830 Brassica napus HOM05D002167 ORTHO05D016814 9.0e-14 82.0 97 45.4
C03p28370 Brassica napus HOM05D002167 ORTHO05D016814 1.5e-13 81.3 97 46.4
QL09p053547 Quercus lobata HOM05D000604 ORTHO05D337225 6.5e-12 75.9 79 50.6
Actinidia20747 Actinidia chinensis HOM05D004241 ORTHO05D056132 3.2e-11 73.6 184 34.8
BcaC02g10323 Brassica carinata HOM05D004241 ORTHO05D026893 3.2e-11 73.6 42 83.3
A09p61840 Brassica napus HOM05D004241 ORTHO05D018769 2.1e-10 70.9 103 45.6


User provided reference genes

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