Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1812.3 928 100.0
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1628.6 912 90.0
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1550.4 914 84.7
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1529.2 914 83.8
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1526.9 912 85.0
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1524.6 932 87.1
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1508.8 914 83.2
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1508.4 914 82.8
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1501.5 914 82.8
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1501.1 914 82.4
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1498.4 914 81.9
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1491.9 912 81.2
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1491.5 912 81.2
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 914 81.2
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1489.2 914 81.7
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1480.3 914 81.4
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1477.2 914 81.4
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1476.5 914 81.5
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1476.1 914 81.1
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1473.4 914 81.2
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1471.4 914 81.2
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1469.5 914 80.6
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1468.0 914 81.0
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1466.4 914 80.6
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1463.0 914 80.7
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1462.6 919 80.4
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1461.8 919 80.4
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 914 80.2
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 914 80.5
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 914 79.9
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1452.2 914 79.1
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1452.2 914 78.8
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1450.6 914 79.1
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1449.5 914 80.1
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1449.1 914 78.8
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1448.7 943 77.9
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1448.3 914 78.9
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1447.6 914 79.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1447.6 914 78.3
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1446.4 914 78.6
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1446.0 912 78.9
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1445.3 914 79.2
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1444.9 914 78.7
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1444.1 914 78.4
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1442.9 914 77.9
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1441.8 915 78.4
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1441.8 915 78.5
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1438.3 915 78.0
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1437.2 914 78.6
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1436.8 914 79.5
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1435.2 914 79.2
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1435.2 915 77.9
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1432.9 914 78.6
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1429.1 914 78.8
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1426.0 914 77.5
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1418.3 912 76.6
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1417.9 967 74.0
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1411.4 914 79.0
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1409.8 919 76.1
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1407.9 912 76.2
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1407.5 914 77.0
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1405.6 914 75.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1399.8 919 76.4
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1399.4 919 76.3
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1399.0 914 76.7
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1391.7 912 76.4
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1387.5 914 75.9
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1385.2 912 75.4
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1381.3 920 75.4
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1373.2 912 75.9
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1370.5 912 75.5
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1364.4 912 74.3
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1362.8 912 74.2
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1361.7 902 75.9
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1360.9 945 72.3
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1357.8 928 73.6
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1357.0 912 73.7
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1345.5 914 75.7
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1336.2 996 71.0
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1327.8 1048 65.5
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1327.4 929 75.0
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1325.8 914 73.0
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1325.1 852 77.0
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1319.3 914 73.9
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1306.6 971 68.3
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1290.0 889 73.0
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1277.3 931 70.2
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1253.0 915 70.4
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1218.0 915 65.7
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1216.1 904 69.6
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1195.6 915 66.2
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1194.9 921 65.0
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1164.1 739 77.5
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1128.2 819 72.0
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1113.2 916 60.5
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1101.3 915 61.6
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 3.4e-308 1061.6 882 59.1
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 2.5e-298 1028.9 611 82.0
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 2.1e-297 1025.8 611 80.7
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 8.0e-273 944.1 725 67.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.8e-272 943.0 640 74.8
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 7.5e-271 937.6 921 51.2
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.6e-266 921.4 630 73.3
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 8.0e-265 917.5 624 74.7
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.4e-264 916.8 926 50.9
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.7e-262 909.8 925 51.0
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 1.1e-253 880.6 537 81.2
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.6e-249 866.7 509 84.3
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 9.2e-245 850.9 921 48.8
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 2.7e-244 849.4 517 81.2
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 5.6e-242 841.6 507 81.3
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 7.6e-231 804.7 930 46.1
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 5.7e-202 708.8 930 43.1
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 4.5e-183 646.0 406 81.8
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 8.3e-169 598.6 917 40.9
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.1e-152 545.0 389 73.0
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.3e-147 527.3 546 53.7
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.3e-134 485.0 409 60.9
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 2.8e-124 450.7 298 78.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 4.7e-124 449.9 389 60.7
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.6e-119 434.9 404 57.2
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 9.6e-117 425.6 934 30.9
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 2.8e-116 424.1 304 71.7
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.3e-102 378.6 1043 28.3
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.8e-86 325.1 214 79.4
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 2.5e-85 321.2 214 75.2
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.3e-85 320.9 303 52.8
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.6e-84 318.5 214 77.6
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 7.7e-82 309.7 290 61.7
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 3.1e-75 287.7 213 66.7
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 1.3e-73 282.3 216 69.9
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 4.7e-71 273.9 371 45.8
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-69 268.1 310 43.9
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 5.5e-64 250.4 141 86.5
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 4.4e-53 214.2 177 60.5
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 4.7e-47 194.1 126 78.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 4.4e-45 187.6 129 72.9
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 1.6e-31 142.5 189 42.3
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 8.0e-31 140.2 179 47.5
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.0e-30 139.8 88 77.3
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 3.4e-29 134.8 79 83.5
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 2.9e-28 131.7 92 70.7
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 7.8e-26 123.6 78 78.2
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 1.9e-24 119.0 91 63.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 8.9e-22 110.2 82 68.3
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 5.8e-21 107.5 76 61.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 2.2e-20 105.5 107 55.1
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.6e-18 99.4 117 53.0
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.1e-16 93.2 68 72.1
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 8.1e-15 87.0 47 91.5
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 3.4e-13 81.6 45 80.0
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-12 79.0 98 41.8
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 8.4e-12 77.0 125 36.0
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 1.9e-11 75.9 47 80.9
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 3.2e-11 75.1 125 35.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 5.4e-11 74.3 125 36.0
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 1.6e-10 72.8 558 21.0
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 2.7e-10 72.0 130 34.6
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.3e-09 69.7 125 34.4
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 3.9e-09 68.2 125 31.2
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.3e-08 65.1 125 32.0
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 1.2e-07 63.2 143 28.7
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 1.2e-07 63.2 143 28.7
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 1.2e-07 63.2 128 33.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 1.2e-07 63.2 128 33.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.2e-07 63.2 128 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 1.6e-07 62.8 137 29.9
Actinidia29495 Actinidia chinensis HOM05D004746 ORTHO05D005863 8.1e-07 60.5 70 57.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.1e-06 60.1 47 55.3
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 2.4e-06 58.9 140 28.6
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 2.4e-06 58.9 150 27.3
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 3.1e-06 58.5 36 83.3
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 4.0e-06 58.2 50 66.0


User provided reference genes

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