Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017164 Carpinus fangiana HOM05D006801 ORTHO05D008490 8.3e-96 353.6 167 100.0
Haze_21041 Corylus avellana HOM05D006801 ORTHO05D008490 4.7e-91 337.8 167 95.2
QL07p034435 Quercus lobata HOM05D006801 ORTHO05D008490 6.8e-82 307.4 166 87.3
TWI74G0346 Tripterygium wilfordii HOM05D006801 ORTHO05D008490 5.8e-81 304.3 167 84.4
Ciclev10012687m.g Citrus clementina HOM05D006801 ORTHO05D008490 1.3e-80 303.1 167 84.4
CiPaw.10G158900 Carya illinoinensis HOM05D006801 ORTHO05D008490 8.4e-80 300.4 168 83.9
Prupe.6G281700 Prunus persica HOM05D006801 ORTHO05D008490 2.3e-77 292.4 166 78.9
TAR140G0003 Trochodendron aralioides HOM05D006801 ORTHO05D008490 2.3e-77 292.4 167 82.0
TAR623G0428 Trochodendron aralioides HOM05D006801 ORTHO05D008490 2.3e-77 292.4 167 82.0
Manes.09G108600 Manihot esculenta HOM05D006801 ORTHO05D008490 5.1e-77 291.2 165 82.4
Cpa.g.sc120.28 Carica papaya HOM05D006801 ORTHO05D008490 3.3e-76 288.5 165 80.6
Lj2A70T41 Lonicera japonica HOM05D006801 ORTHO05D008490 6.2e-75 284.3 165 82.4
MD04G1161900 Malus domestica HOM05D006801 ORTHO05D008490 1.1e-74 283.5 166 77.7
COL.COLO4_14495 Corchorus olitorius HOM05D006801 ORTHO05D008490 1.4e-74 283.1 169 78.7
Nitab4.5_0005348g0010 Nicotiana tabacum HOM05D006801 ORTHO05D008490 1.4e-74 283.1 164 79.9
arahy.Tifrunner.gnm1.ann1.711CF1 Arachis hypogaea HOM05D006801 ORTHO05D008490 6.9e-74 280.8 170 77.1
GSVIVG01030332001 Vitis vinifera HOM05D006801 ORTHO05D008490 9.0e-74 280.4 167 79.0
arahy.Tifrunner.gnm1.ann1.SWS1EB Arachis hypogaea HOM05D006801 ORTHO05D008490 2.6e-73 278.9 170 77.1
Medtr4g017650 Medicago truncatula HOM05D006801 ORTHO05D008490 1.3e-72 276.6 165 77.6
Atru.chr8.2288 Acer truncatum HOM05D006801 ORTHO05D008490 1.7e-72 276.2 162 78.4
CAN.G41.4 Capsicum annuum HOM05D006801 ORTHO05D008490 2.9e-72 275.4 163 77.9
Gorai.002G264900 Gossypium raimondii HOM05D006801 ORTHO05D008490 3.8e-72 275.0 166 74.7
Gohir.A04G094200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 4.9e-72 274.6 164 76.8
Cc06_g01030 Coffea canephora HOM05D006801 ORTHO05D008490 6.4e-72 274.2 168 76.2
Peaxi162Scf01132g00023 Petunia axillaris HOM05D006801 ORTHO05D008490 8.4e-72 273.9 164 76.2
PGR031G3867 Punica granatum HOM05D006801 ORTHO05D008490 1.4e-71 273.1 167 78.4
Gohir.A01G228300 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.9e-71 272.7 166 74.1
Nn2g13198 Nelumbo nucifera HOM05D006801 ORTHO05D008490 2.4e-71 272.3 168 77.4
TPR.G8225 Trifolium pratense HOM05D006801 ORTHO05D008490 2.4e-71 272.3 165 76.4
Gorai.012G117400 Gossypium raimondii HOM05D006801 ORTHO05D008490 3.2e-71 271.9 164 75.6
HanXRQChr10g0291491 Helianthus annuus HOM05D006801 ORTHO05D008490 4.2e-71 271.6 164 74.4
Eucgr.A00595 Eucalyptus grandis HOM05D006801 ORTHO05D008490 5.4e-71 271.2 167 77.2
Psat7g243680 Pisum sativum HOM05D006801 ORTHO05D008490 1.2e-70 270.0 170 72.9
DCAR_028865 Daucus carota HOM05D006801 ORTHO05D008490 1.6e-70 269.6 166 77.1
Gohir.D04G133600 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.6e-70 269.6 164 75.0
Lsat_1_v5_gn_9_35501 Lactuca sativa HOM05D006801 ORTHO05D008490 1.6e-70 269.6 164 75.0
CsaV3_3G033500 Cucumis sativus L. HOM05D006801 ORTHO05D008490 2.1e-70 269.2 163 77.9
Thecc.05G010700 Theobroma cacao HOM05D006801 ORTHO05D008490 2.1e-70 269.2 164 77.4
ClCG10G022380 Citrullus lanatus HOM05D006801 ORTHO05D008490 3.5e-70 268.5 165 77.0
CANSAT35G1909 Cannabis sativa HOM05D006801 ORTHO05D008490 6.0e-70 267.7 168 76.2
Potri.016G121000 Populus trichocarpa HOM05D006801 ORTHO05D008490 7.8e-70 267.3 165 76.4
Ca_20198_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.7e-69 266.2 165 73.3
MELO3C009141.2 Cucumis melo HOM05D006801 ORTHO05D008490 1.7e-69 266.2 163 76.7
Oeu033563.1 Olea europaea HOM05D006801 ORTHO05D008490 1.7e-69 266.2 165 75.8
Lj3g0017579 Lotus japonicus HOM05D006801 ORTHO05D008490 3.9e-69 265.0 165 74.5
ECA247G2271 Erigeron canadensis HOM05D006801 ORTHO05D008490 8.7e-69 263.8 166 74.1
RcHm_v2.0_Chr3g0462371 Rosa chinensis HOM05D006801 ORTHO05D008490 1.1e-68 263.5 166 74.7
Aqoxy4G02453 Aquilegia oxysepala HOM05D006801 ORTHO05D008490 4.3e-68 261.5 168 74.4
MSTRG.18989 Avicennia marina HOM05D006801 ORTHO05D008490 4.3e-68 261.5 165 73.3
PSO170G1048 Papaver somniferum HOM05D006801 ORTHO05D008490 6.2e-67 257.7 167 73.1
THA.LOC104816206 Tarenaya hassleriana HOM05D006801 ORTHO05D008490 1.4e-66 256.5 167 71.3
Lalb_Chr12g0207061 Lupinus albus HOM05D006801 ORTHO05D008490 4.0e-66 255.0 165 72.7
Phvul.010G073500 Phaseolus vulgaris HOM05D006801 ORTHO05D008490 5.3e-66 254.6 164 75.0
FvH4_6g11060 Fragaria vesca HOM05D006801 ORTHO05D008490 6.9e-66 254.2 167 71.9
FAN14G3154 Fragaria x ananassa HOM05D006801 ORTHO05D008490 6.9e-66 254.2 167 71.9
Aa31LG1G22920 Aethionema arabicum HOM05D006801 ORTHO05D008490 9.0e-66 253.8 165 70.3
AUR62030790 Chenopodium quinoa HOM05D006801 ORTHO05D008490 9.0e-66 253.8 166 70.5
ECA247G3879 Erigeron canadensis HOM05D006801 ORTHO05D008490 9.0e-66 253.8 166 71.7
VMungo0331G1898 Vigna mungo HOM05D006801 ORTHO05D008490 1.2e-65 253.4 166 74.1
Sc01g0005740 Simmondsia chinensis HOM05D006801 ORTHO05D008490 2.6e-65 252.3 164 69.5
CSS0028234 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 7.6e-65 250.8 167 72.5
Migut.J00126 Erythranthe guttata HOM05D006801 ORTHO05D008490 1.7e-64 249.6 166 70.5
Os05g0468800 Oryza sativa ssp. japonica HOM05D006801 ORTHO05D008490 3.8e-64 248.4 168 69.6
AUR62030503 Chenopodium quinoa HOM05D006801 ORTHO05D008490 6.4e-64 247.7 166 69.3
EL10Ac5g12521 Beta vulgaris HOM05D006801 ORTHO05D008490 2.4e-63 245.7 166 69.3
Sopen09g001050 Solanum pennellii HOM05D006801 ORTHO05D008490 4.2e-63 245.0 166 72.3
Solyc09g005060.3 Solanum lycopersicum HOM05D006801 ORTHO05D008490 5.4e-63 244.6 166 72.3
Carub.0006s0052 Capsella rubella HOM05D006801 ORTHO05D008490 9.3e-63 243.8 165 67.9
CARHR211660 Cardamine hirsuta HOM05D006801 ORTHO05D008490 1.6e-62 243.0 160 68.8
Glyma.01G123100 Glycine max HOM05D006801 ORTHO05D008490 2.1e-62 242.7 166 69.9
Sp6g40620 Schrenkiella parvula HOM05D006801 ORTHO05D008490 2.7e-62 242.3 165 66.7
PSO729G0120 Papaver somniferum HOM05D006801 ORTHO05D008490 6.0e-62 241.1 170 71.8
AL6G10870 Arabidopsis lyrata HOM05D006801 ORTHO05D008490 1.3e-61 240.0 165 67.3
Glyma.03G052200 Glycine max HOM05D006801 ORTHO05D008490 1.8e-61 239.6 166 68.7
Ah.12g058900 Amaranthus hybridus HOM05D006801 ORTHO05D008490 3.9e-61 238.4 165 69.7
BraA10t45402Z Brassica rapa HOM05D006801 ORTHO05D008490 5.1e-61 238.0 160 67.5
PSO729G0014 Papaver somniferum HOM05D006801 ORTHO05D008490 5.1e-61 238.0 169 69.8
PSO724G0025 Papaver somniferum HOM05D006801 ORTHO05D008490 8.7e-61 237.3 169 69.2
SalBow5G2624 Salvia bowleyana HOM05D006801 ORTHO05D008490 1.1e-60 236.9 162 67.3
SalBow5G4248 Salvia bowleyana HOM05D006801 ORTHO05D008490 1.5e-60 236.5 162 67.3
AT5G01300 Arabidopsis thaliana HOM05D006801 ORTHO05D008490 1.9e-60 236.1 165 64.8
BcaC06g31972 Brassica carinata HOM05D006801 ORTHO05D008490 1.9e-60 236.1 162 66.7
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 2.1e-59 232.6 162 67.9
unitig_26.g9083 Utricularia gibba HOM05D006801 ORTHO05D008490 3.1e-58 228.8 156 68.6
Medtr4g017680 Medicago truncatula HOM05D006801 ORTHO05D008490 4.0e-58 228.4 169 66.9
FAN09G2180 Fragaria x ananassa HOM05D006801 ORTHO05D008490 3.2e-55 218.8 143 70.6
Lalb_Chr07g0191271 Lupinus albus HOM05D006801 ORTHO05D008490 4.2e-55 218.4 141 71.6
MBI15_g30116_MAGBIO Magnolia biondii HOM05D006801 ORTHO05D008490 1.2e-54 216.9 142 71.1
Lalb_Chr12g0207091 Lupinus albus HOM05D006801 ORTHO05D008490 4.6e-54 214.9 169 63.3
Zm00001eb351790 Zea mays HOM05D006801 ORTHO05D008490 4.6e-54 214.9 171 64.3
C09p74590 Brassica napus HOM05D005640 ORTHO05D007124 2.3e-53 212.6 141 67.4
HPP92_026978 Vanilla planifolia HOM05D006801 ORTHO05D008490 5.1e-53 211.5 167 61.1
A10p33680 Brassica napus HOM05D005640 ORTHO05D007124 1.9e-52 209.5 141 66.7
Thhalv10014869m.g Eutrema salsugineum HOM05D006801 ORTHO05D008490 5.6e-52 208.0 161 61.5
Sed0001867 Sechium edule HOM05D006801 ORTHO05D008490 7.4e-52 207.6 166 62.7
VMungo0331G1841 Vigna mungo HOM05D006801 ORTHO05D008490 7.4e-52 207.6 169 62.7
HPP92_015418 Vanilla planifolia HOM05D006801 ORTHO05D008490 3.7e-51 205.3 167 59.3
Dinv18520 Davidia involucrata HOM05D006801 ORTHO05D008490 6.2e-51 204.5 129 76.7
Lj3g0026162 Lotus japonicus HOM05D006801 ORTHO05D008490 3.1e-50 202.2 171 61.4
Nitab4.5_0000539g0120 Nicotiana tabacum HOM05D006801 ORTHO05D008490 5.8e-49 198.0 129 71.3
CSS0011838 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 1.0e-48 197.2 170 59.4
SEGI_01937 Sequoiadendron giganteum HOM05D006801 ORTHO05D008490 1.7e-48 196.4 164 53.7
Gohir.D01G218200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 2.7e-46 189.1 118 72.0
arahy.Tifrunner.gnm1.ann1.M4T34S Arachis hypogaea HOM05D006801 ORTHO05D008490 6.0e-46 188.0 176 57.4
Mapoly0003s0041 Marchantia polymorpha HOM05D006801 ORTHO05D008490 1.8e-42 176.4 162 51.2
SMO347G0428 Selaginella moellendorffii HOM05D006801 ORTHO05D008490 1.5e-41 173.3 162 51.9
CDE08G0176 Ceratophyllum demersum HOM05D006801 ORTHO05D008490 1.3e-40 170.2 156 56.4
CBR_g39562 Chara braunii HOM05D006801 ORTHO05D008490 2.1e-38 162.9 166 45.8
Pp3c1_41520 Physcomitrium patens HOM05D006801 ORTHO05D008490 6.7e-37 157.9 161 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3494 Anthoceros agrestis HOM05D006801 ORTHO05D008490 1.3e-35 153.7 143 53.8
Ca_20197_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.7e-35 153.3 168 49.4
ATR0681G271 Amborella trichopoda HOM05D006801 ORTHO05D008490 9.1e-34 147.5 86 82.6
Hma1.2p1_0501F.1_g167640 Hydrangea macrophylla HOM05D006801 ORTHO05D008490 2.5e-31 139.4 107 66.4
PGSC0003DMG400006267 Solanum tuberosum HOM05D006801 ORTHO05D008490 2.5e-31 139.4 84 77.4
arahy.Tifrunner.gnm1.ann1.1WC97K Arachis hypogaea HOM05D006801 ORTHO05D008490 7.2e-31 137.9 132 56.1
Pp3c21_8040 Physcomitrium patens HOM05D006801 ORTHO05D008490 1.4e-29 133.7 156 46.2
Prupe.1G005200 Prunus persica HOM05D006801 ORTHO05D008490 5.5e-23 111.7 153 45.1
ATR0681G235 Amborella trichopoda HOM05D006801 ORTHO05D008490 3.2e-15 85.9 51 72.5
FAN05G3081 Fragaria x ananassa HOM05D000734 ORTHO05D002223 4.4e-12 75.5 43 79.1
Actinidia20750 Actinidia chinensis HOM05D006801 ORTHO05D008490 1.2e-09 67.4 117 38.5


User provided reference genes

Program Settings