Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.9e-109 397.1 202 100.0
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.1e-105 386.7 202 97.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.4e-99 364.8 202 90.6
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.1e-97 360.1 202 91.1
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 9.1e-97 357.1 201 88.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.6e-96 355.5 202 87.6
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 3.8e-95 351.7 202 86.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 6.1e-93 344.4 202 84.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.0e-91 339.3 200 82.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.6e-91 339.0 202 82.2
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.4e-91 338.2 202 82.7
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.5e-91 337.4 199 83.9
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 9.7e-91 337.0 202 83.2
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.8e-90 334.7 203 83.3
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 4.8e-90 334.7 201 83.6
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 8.3e-90 334.0 193 85.0
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.1e-89 331.6 201 80.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.0e-89 330.9 202 81.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.6e-88 329.7 202 81.2
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.0e-88 329.3 197 83.2
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.0e-88 329.3 202 84.2
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.7e-88 328.9 201 81.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.5e-88 328.6 201 79.6
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.5e-88 328.2 200 79.5
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.9e-88 327.8 202 81.2
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 7.7e-88 327.4 201 82.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.0e-87 327.0 201 79.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.3e-87 326.6 201 82.1
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.5e-87 324.3 202 80.2
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 8.5e-87 323.9 200 79.5
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.1e-86 323.6 200 79.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.9e-86 322.8 199 78.4
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.5e-86 322.4 200 79.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.2e-86 322.0 199 80.9
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 3.2e-86 322.0 201 80.6
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 7.2e-86 320.9 201 81.1
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 7.2e-86 320.9 201 80.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.2e-85 320.1 202 80.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.2e-85 320.1 202 80.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.1e-85 319.3 199 79.9
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-85 319.3 202 80.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.7e-85 318.9 199 79.9
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-85 318.9 192 82.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.7e-85 318.9 193 82.4
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 3.6e-85 318.5 202 80.2
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.0e-85 317.4 202 80.2
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.4e-84 316.6 202 78.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.0e-84 315.5 201 79.1
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.0e-84 315.1 200 78.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 5.2e-84 314.7 202 80.2
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.2e-84 314.7 205 79.5
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 5.2e-84 314.7 201 79.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 5.2e-84 314.7 201 79.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 5.2e-84 314.7 201 79.1
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.8e-84 314.3 200 78.5
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.8e-84 314.3 203 77.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.8e-84 314.3 202 77.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-83 313.5 202 77.7
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.2e-83 313.5 205 79.0
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.2e-83 313.5 205 79.0
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.5e-83 313.2 200 78.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.5e-83 313.2 193 81.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.6e-83 312.4 191 81.7
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.4e-83 312.0 226 71.2
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.4e-83 311.6 200 79.5
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.7e-83 311.2 226 71.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 7.5e-83 310.8 202 77.7
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 9.8e-83 310.5 193 80.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.3e-82 307.8 200 75.0
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.3e-82 307.4 201 76.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.3e-82 307.4 199 75.9
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.8e-81 306.2 202 73.8
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.8e-81 306.2 200 74.5
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.8e-81 306.2 201 77.6
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.8e-81 306.2 193 79.8
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-81 306.2 198 77.8
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.8e-81 306.2 193 79.8
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.4e-81 305.8 193 78.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.4e-81 305.8 193 79.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.1e-81 305.1 198 77.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.1e-81 305.1 189 79.4
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 4.1e-81 305.1 202 79.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 5.4e-81 304.7 192 79.7
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-81 304.7 198 77.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 9.1e-81 303.9 191 78.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-80 303.5 190 80.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.2e-80 303.5 198 76.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 4.5e-80 301.6 193 77.7
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 5.9e-80 301.2 190 79.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 5.9e-80 301.2 190 79.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.9e-80 301.2 192 79.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 7.7e-80 300.8 198 75.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 7.7e-80 300.8 198 75.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-78 297.0 194 78.4
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.2e-78 294.3 194 77.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.5e-78 293.9 202 77.7
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.1e-77 292.7 182 80.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.1e-77 292.7 202 77.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.8e-77 292.4 187 78.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.6e-77 292.0 202 77.2
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.6e-77 292.0 202 73.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 3.6e-77 292.0 193 75.6
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 2.3e-76 289.3 186 80.1
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.0e-76 288.5 177 81.9
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 4.0e-76 288.5 177 79.1
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 5.2e-76 288.1 178 79.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.8e-76 287.7 202 77.2
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 8.9e-76 287.3 192 70.8
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.5e-75 286.6 199 74.9
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.0e-75 286.2 174 80.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.7e-72 275.8 198 72.7
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.9e-72 274.6 203 69.0
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.1e-69 266.2 162 79.6
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 6.1e-69 264.6 184 75.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.4e-68 263.5 200 66.5
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.3e-68 262.7 190 69.5
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 8.9e-68 260.8 179 73.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.2e-67 260.4 204 66.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 7.5e-67 257.7 192 67.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.3e-66 256.9 193 68.4
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 8.3e-66 254.2 190 67.9
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.8e-64 247.7 191 67.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-61 239.2 186 68.8
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.6e-59 232.6 171 71.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.6e-59 232.6 200 60.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 6.4e-58 228.0 184 62.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-57 226.5 204 62.3
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-55 220.7 157 70.1
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-55 220.7 157 70.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.6e-55 218.0 181 60.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.1e-53 213.0 131 77.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.4e-52 210.3 197 61.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 4.0e-52 208.8 192 60.4
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 8.3e-50 201.1 198 57.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.6e-47 191.4 111 82.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.6e-43 179.5 113 77.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.8e-40 167.9 184 48.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 7.8e-40 167.9 194 46.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-38 164.1 94 85.1
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-33 147.5 209 46.4
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.4e-33 147.1 87 79.3
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.3e-33 144.4 187 49.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.1e-25 120.9 156 41.0
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.6e-24 115.5 70 78.6
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.5e-22 110.5 156 42.9
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.1e-20 104.4 177 36.7
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 9.0e-20 101.3 174 36.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 5.8e-19 98.6 67 74.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.9e-18 96.3 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.0e-15 86.3 58 70.7
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 8.7e-15 84.7 66 62.1
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.7e-13 79.3 62 61.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 5.3e-12 75.5 113 45.1
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.2e-11 74.3 71 63.4
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 4.5e-11 72.4 62 59.7
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-09 67.8 38 84.2
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 6.1e-08 62.0 152 33.6


User provided reference genes

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