Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.8e-221 772.3 404 100.0
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 5.7e-90 335.5 296 68.2
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 8.2e-89 331.6 291 65.3
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 9.7e-74 281.6 300 54.7
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 7.0e-72 275.4 304 57.2
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.6e-71 274.2 288 56.2
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 1.7e-70 270.8 308 55.8
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.7e-70 270.8 300 58.0
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 5.0e-70 269.2 300 58.0
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 8.5e-70 268.5 298 55.7
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.9e-69 267.3 304 53.9
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 9.4e-69 265.0 301 52.2
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.2e-68 264.6 322 54.0
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.2e-68 264.6 299 51.2
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.6e-68 264.2 289 54.7
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 4.7e-68 262.7 309 53.1
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 4.7e-68 262.7 295 54.9
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 6.1e-68 262.3 300 52.7
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 8.0e-68 261.9 295 53.2
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 1.4e-67 261.2 294 56.8
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.4e-67 261.2 294 56.8
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.8e-67 260.8 323 53.6
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 4.0e-67 259.6 303 55.4
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 4.0e-67 259.6 298 51.0
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.2e-66 258.1 300 52.7
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 1.2e-66 258.1 308 51.6
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 1.2e-66 258.1 303 52.5
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.2e-66 258.1 301 51.8
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 1.5e-66 257.7 298 56.4
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.0e-66 257.3 296 57.8
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.3e-66 256.5 309 50.8
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 5.7e-66 255.8 295 50.5
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 7.5e-66 255.4 306 51.6
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 9.7e-66 255.0 299 50.2
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 1.3e-65 254.6 321 50.2
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.3e-65 254.6 306 52.0
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 2.2e-65 253.8 306 51.3
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.2e-65 253.8 293 50.9
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 2.2e-65 253.8 301 50.8
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 2.8e-65 253.4 275 54.9
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 2.8e-65 253.4 299 52.2
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 2.8e-65 253.4 308 50.6
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.1e-64 251.5 299 49.8
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.4e-64 251.1 295 49.8
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.8e-64 250.8 298 50.7
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.4e-64 250.4 298 50.0
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 3.1e-64 250.0 321 48.3
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.1e-64 249.6 301 52.5
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 5.3e-64 249.2 298 49.7
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 5.3e-64 249.2 320 50.9
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 9.1e-64 248.4 298 49.7
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 9.1e-64 248.4 321 51.7
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.6e-63 247.7 299 49.5
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 5.9e-63 245.7 292 49.7
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 1.0e-62 245.0 298 50.0
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 2.2e-62 243.8 300 48.0
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 3.8e-62 243.0 298 48.3
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 6.5e-62 242.3 304 48.4
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.1e-61 241.5 300 49.7
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 1.5e-61 241.1 300 48.7
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 1.5e-61 241.1 299 49.5
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.9e-61 240.7 287 50.9
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 2.5e-61 240.4 307 47.2
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 3.2e-61 240.0 300 48.0
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.2e-60 238.0 300 49.7
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.2e-60 238.0 297 49.2
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 2.7e-60 236.9 300 49.0
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 2.7e-60 236.9 287 48.1
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.0e-59 235.0 298 49.0
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 3.0e-59 233.4 289 48.4
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 6.8e-59 232.3 297 45.8
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 2.6e-58 230.3 288 47.2
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 5.7e-58 229.2 290 49.3
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 7.5e-58 228.8 278 50.4
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 1.3e-57 228.0 289 47.8
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 2.2e-57 227.3 302 50.0
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.1e-56 224.9 281 50.5
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 3.1e-56 223.4 298 46.3
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 1.6e-55 221.1 297 49.8
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 1.6e-55 221.1 297 45.8
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 2.0e-55 220.7 298 45.6
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 7.7e-55 218.8 298 45.3
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 1.3e-54 218.0 297 49.5
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 5.0e-54 216.1 281 48.4
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 5.0e-54 216.1 298 46.0
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 8.6e-54 215.3 298 49.7
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 2.5e-53 213.8 298 44.6
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 3.3e-53 213.4 281 47.3
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.2e-52 211.5 283 47.0
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.6e-52 211.1 284 48.9
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 1.4e-51 208.0 300 44.3
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 2.6e-50 203.8 298 49.0
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 1.1e-48 198.4 305 47.9
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 3.1e-48 196.8 271 43.5
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 4.5e-47 193.0 270 44.8
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 1.5e-45 188.0 291 43.3
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 8.0e-44 182.2 392 37.2
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 2.3e-43 180.6 227 47.6
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 1.5e-42 177.9 185 55.7
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 2.2e-41 174.1 181 53.0
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 1.9e-40 171.0 301 40.9
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 2.7e-39 167.2 166 54.8
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.4e-34 150.2 377 32.1
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 3.4e-34 150.2 276 39.1
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 7.5e-34 149.1 266 42.5
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 2.8e-28 130.6 272 36.0
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 6.2e-28 129.4 338 33.1
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 4.4e-26 123.2 190 38.9
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 2.9e-25 120.6 270 36.3
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.1e-24 118.6 181 42.0
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 3.3e-21 107.1 168 46.4
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 9.5e-21 105.5 121 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 4.0e-19 100.1 376 25.0
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 7.6e-18 95.9 324 30.6
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 2.7e-15 87.4 174 38.5
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 5.8e-10 69.7 78 51.3
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 2.9e-09 67.4 54 64.8
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 9.3e-08 62.4 75 45.3
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 3.5e-07 60.5 145 40.0
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 1.3e-06 58.5 67 50.7
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 5.1e-06 56.6 72 44.4
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 6.6e-06 56.2 69 42.0


User provided reference genes

Program Settings