Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 2.5e-198 695.3 362 100.0
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 7.9e-176 620.5 337 95.8
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 7.9e-176 620.5 337 95.8
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 8.0e-144 514.2 339 77.9
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 2.4e-140 502.7 369 72.1
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 8.9e-127 457.6 361 69.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.2e-126 457.2 337 68.8
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.9e-123 444.9 358 64.5
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.9e-123 444.9 358 64.5
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.9e-123 444.9 358 64.5
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.9e-123 444.9 358 64.5
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 2.3e-122 443.0 352 67.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 5.0e-122 441.8 360 68.1
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 9.5e-121 437.6 338 66.9
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.2e-120 437.2 338 66.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.4e-119 433.7 357 65.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.6e-118 429.5 338 68.3
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.7e-117 426.8 345 64.9
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.9e-116 423.3 351 65.5
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 2.4e-116 422.9 365 63.0
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 4.1e-116 422.2 341 66.9
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 7.8e-115 417.9 350 63.4
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.3e-114 416.4 373 60.3
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 4.3e-113 412.1 348 63.2
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 5.6e-113 411.8 358 62.3
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 7.3e-113 411.4 341 64.2
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 9.5e-113 411.0 341 64.2
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.6e-112 410.2 353 59.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 4.7e-112 408.7 337 63.5
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 6.2e-112 408.3 349 59.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 5.2e-111 405.2 351 63.5
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 8.9e-111 404.4 340 60.0
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 4.4e-110 402.1 351 60.7
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.3e-109 400.6 353 61.2
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 2.2e-109 399.8 359 59.1
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 4.9e-109 398.7 355 60.8
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 6.4e-109 398.3 357 59.7
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.4e-108 397.1 345 62.3
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 4.1e-108 395.6 337 62.6
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.6e-107 393.7 351 61.3
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 3.9e-106 389.0 320 64.4
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 5.1e-106 388.7 358 58.7
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 8.6e-106 387.9 352 59.7
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.3e-105 385.6 352 59.4
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 7.3e-105 384.8 354 58.2
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.2e-104 384.0 343 59.8
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.1e-104 383.3 338 60.9
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 3.6e-104 382.5 339 57.8
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 4.7e-104 382.1 343 58.9
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 8.1e-104 381.3 341 58.4
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.1e-103 380.9 356 60.1
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.1e-103 380.9 348 60.3
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.1e-103 380.9 339 60.8
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.1e-103 379.4 358 57.8
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.8e-103 378.3 339 57.8
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 6.8e-103 378.3 338 58.3
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 2.6e-102 376.3 357 58.3
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 3.4e-102 375.9 348 57.8
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 4.4e-102 375.6 355 55.8
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.8e-102 375.2 341 58.4
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.3e-101 374.0 339 56.6
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.7e-101 373.6 339 60.8
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.1e-100 370.9 286 65.7
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.1e-100 370.9 345 57.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.9e-100 370.2 358 57.5
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 3.2e-100 369.4 356 59.0
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 5.4e-100 368.6 357 58.8
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 5.4e-100 368.6 338 54.7
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 7.1e-100 368.2 346 58.7
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-99 367.5 359 58.2
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.0e-98 364.4 338 56.2
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 6.6e-98 361.7 351 58.1
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.5e-97 360.5 369 55.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.5e-97 359.8 343 57.1
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 4.3e-97 359.0 371 53.4
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.2e-96 357.5 342 53.8
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 3.6e-96 355.9 356 53.9
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.7e-96 355.5 337 59.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 8.1e-96 354.8 332 55.4
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.1e-95 354.4 362 55.0
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.8e-95 353.6 369 53.7
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.8e-95 353.6 369 53.7
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 3.1e-95 352.8 363 55.6
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 4.0e-95 352.4 349 53.6
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.0e-95 352.4 363 55.6
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.2e-94 350.9 342 56.4
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 3.4e-94 349.4 343 57.7
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 7.6e-94 348.2 361 53.5
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 2.2e-93 346.7 337 53.4
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 3.8e-93 345.9 352 55.4
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 6.4e-93 345.1 358 52.8
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.7e-91 339.7 334 57.8
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 4.6e-91 339.0 355 54.9
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.2e-85 320.1 323 54.8
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.9e-84 317.0 364 50.0
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 7.4e-81 305.1 338 47.0
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.5e-78 297.4 337 49.0
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.9e-76 290.4 347 49.3
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.1e-73 281.2 216 64.4
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.3e-73 279.6 192 70.3
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 9.3e-68 261.5 344 43.6
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 7.9e-67 258.5 164 71.3
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 7.9e-67 258.5 322 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 1.3e-64 251.1 333 40.8
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 8.2e-64 248.4 343 42.3
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 3.4e-62 243.0 355 43.4
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 4.5e-62 242.7 329 41.3
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 3.6e-59 233.0 250 55.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.1e-59 232.3 129 84.5
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.9e-57 227.3 209 53.6
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.4e-57 225.3 371 37.5
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 3.6e-51 206.5 331 45.6
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.8e-50 204.1 129 73.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 7.4e-49 198.7 357 38.7
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 7.2e-44 182.2 351 34.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 4.7e-43 179.5 212 51.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.0e-42 178.3 331 41.7
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.2e-37 160.6 255 42.7
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 3.8e-37 159.8 329 35.9
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 3.8e-37 159.8 329 34.0
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.4e-31 140.6 159 54.7
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 1.6e-30 137.9 133 62.4
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.0e-30 137.5 337 30.3
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.7e-30 137.1 86 73.3
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 3.7e-24 116.7 87 62.1
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.7e-22 109.0 62 79.0
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.5e-20 104.0 90 58.9
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 6.8e-18 95.9 164 32.9
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 8.9e-18 95.5 137 44.5
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 2.8e-16 90.5 60 68.3
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 2.1e-11 74.3 108 39.8
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.2e-08 64.3 58 55.2
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 4.1e-07 60.1 159 35.8
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 1.2e-06 58.5 98 33.7


User provided reference genes

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