Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 7.2e-154 547.4 306 100.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 7.6e-95 351.3 386 59.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 9.3e-61 238.0 341 47.2
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.1e-59 232.3 385 43.9
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.1e-58 231.1 351 51.3
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 7.7e-55 218.4 332 45.8
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 8.5e-54 214.9 386 43.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.5e-53 213.4 212 59.9
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 6.1e-52 208.8 325 43.1
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 2.0e-50 203.8 225 56.0
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 3.3e-50 203.0 336 44.6
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 8.2e-49 198.4 332 42.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 9.1e-48 194.9 330 42.7
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-47 194.5 383 41.3
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 2.0e-47 193.7 210 55.2
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.6e-47 193.4 383 41.3
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.4e-47 193.0 258 49.2
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.4e-47 193.0 318 44.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.9e-46 189.9 259 50.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.9e-46 189.9 337 43.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.9e-45 187.2 196 58.7
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.9e-45 187.2 373 40.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 3.2e-45 186.4 328 41.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.2e-45 186.0 308 45.1
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.6e-44 184.1 222 51.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 3.6e-44 183.0 210 53.3
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 4.7e-44 182.6 175 56.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 4.7e-44 182.6 222 51.8
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 7.9e-44 181.8 339 41.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.7e-43 178.7 320 42.8
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.5e-42 177.6 229 47.6
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.0e-42 177.2 235 48.5
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 9.7e-42 174.9 212 50.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-41 173.7 255 45.9
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.2e-41 173.7 251 46.6
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.2e-41 173.7 264 47.3
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 2.8e-41 173.3 258 48.4
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.3e-41 172.2 339 41.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.3e-41 172.2 258 48.1
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 6.3e-41 172.2 236 46.6
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 8.2e-41 171.8 210 50.0
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 8.2e-41 171.8 259 45.6
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.8e-40 170.6 186 56.5
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.8e-40 170.6 213 49.3
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.8e-40 170.6 251 43.0
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.1e-40 169.5 309 40.8
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.2e-39 167.9 251 47.4
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.2e-39 167.9 251 47.4
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.2e-39 167.9 251 47.4
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.0e-39 167.2 211 50.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 2.6e-39 166.8 212 50.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.6e-39 166.8 182 51.1
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.6e-39 166.8 254 44.5
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.5e-39 166.4 263 46.8
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.2e-38 163.7 341 38.7
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.9e-37 160.6 207 48.8
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 4.2e-37 159.5 333 37.8
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.6e-36 157.5 315 38.7
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 4.7e-36 156.0 143 62.9
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.7e-36 156.0 183 53.6
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 6.1e-36 155.6 252 42.1
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.8e-35 154.1 186 48.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.8e-35 154.1 276 42.0
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.1e-34 151.4 139 59.7
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.5e-34 151.0 160 53.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.5e-34 151.0 256 39.8
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.5e-34 151.0 125 64.0
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.0e-34 150.6 319 35.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-34 150.6 304 38.5
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.4e-34 149.4 237 44.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 9.7e-34 148.3 217 45.6
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.3e-33 147.9 183 51.4
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.7e-33 147.5 237 43.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.7e-33 147.5 268 42.5
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.2e-33 147.1 265 41.9
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.8e-33 146.7 313 38.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 3.7e-33 146.4 309 39.5
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 4.8e-33 146.0 257 40.1
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 6.3e-33 145.6 338 34.9
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 8.2e-33 145.2 276 40.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 1.1e-32 144.8 273 41.4
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.1e-32 144.8 224 45.1
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 1.4e-32 144.4 264 40.9
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.4e-32 144.4 188 51.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.8e-32 144.1 312 37.8
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 5.3e-32 142.5 273 43.2
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 5.3e-32 142.5 272 41.5
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.3e-32 142.5 355 34.9
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 7.0e-32 142.1 351 34.2
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.0e-31 140.6 356 34.3
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.6e-31 140.2 223 43.5
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.6e-31 140.2 314 36.3
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.0e-30 138.3 226 44.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 8.5e-30 135.2 409 31.8
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 8.5e-30 135.2 153 51.0
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 6.8e-27 125.6 380 32.6
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.4e-26 122.9 189 45.5
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.5e-26 122.1 187 46.0
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.7e-25 120.9 267 36.0
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.8e-25 119.4 178 43.8
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 6.3e-25 119.0 189 44.4
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 2.4e-24 117.1 300 36.7
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.4e-24 115.9 185 42.7
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 2.0e-23 114.0 214 37.4
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 4.5e-23 112.8 270 31.9
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.0e-22 111.7 206 40.8
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.0e-22 111.7 200 38.0
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.7e-22 110.9 270 34.8
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.9e-22 110.2 107 56.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 5.0e-22 109.4 203 40.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.1e-21 108.2 269 32.0
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.1e-21 108.2 211 35.1
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.1e-21 108.2 307 33.9
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.5e-21 107.8 237 34.2
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.5e-21 107.8 218 36.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.2e-21 106.7 314 34.1
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.2e-21 106.3 262 33.2
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 4.2e-21 106.3 324 32.4
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 6.1e-20 102.4 303 34.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 8.0e-20 102.1 303 32.7
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.8e-19 100.9 185 36.8
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 4.0e-19 99.8 176 35.8
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 5.2e-19 99.4 417 26.6
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 5.2e-19 99.4 366 27.9
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-18 97.8 78 65.4
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 1.5e-18 97.8 208 37.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.5e-18 97.8 175 38.9
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 2.6e-18 97.1 237 35.4
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.4e-18 96.7 232 34.1
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.5e-18 95.5 182 35.2
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.3e-17 94.7 223 35.9
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.8e-17 93.6 207 32.9
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.8e-17 93.6 148 36.5
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 3.7e-17 93.2 92 52.2
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 4.9e-17 92.8 167 36.5
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 8.3e-17 92.0 238 33.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.8e-16 90.9 201 34.3
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.1e-16 90.1 193 37.3
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.1e-16 89.7 207 32.9
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 4.1e-16 89.7 172 39.5
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 5.9e-15 85.9 348 27.6
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.0e-14 85.1 273 29.3
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.0e-14 85.1 272 30.5
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.3e-14 84.0 190 31.1
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 2.3e-14 84.0 201 36.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.8e-14 83.2 174 31.0
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.6e-12 77.8 272 29.4
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 2.1e-12 77.4 200 34.5
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 4.7e-12 76.3 278 31.3
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.0e-11 75.1 211 33.6
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 2.3e-11 73.9 223 31.4
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 8.9e-11 72.0 198 29.3
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 7.0e-08 62.4 284 27.1
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.6e-07 61.2 173 29.5
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 7.8e-07 58.9 243 25.5


User provided reference genes

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