Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017011 Carpinus fangiana HOM05D000041 ORTHO05D026367 1.3e-76 290.0 185 100.0
Haze_21195 Corylus avellana HOM05D000041 ORTHO05D000061 7.9e-31 137.9 79 89.9
QL07p031748 Quercus lobata HOM05D000041 ORTHO05D000061 5.7e-29 131.7 78 84.6
FAN14G3564 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.7e-28 130.2 204 45.1
Psat3g117800 Pisum sativum HOM05D000041 ORTHO05D000061 1.7e-25 120.2 164 47.6
CiPaw.09G222600 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.5e-24 117.1 80 78.8
TWI77G0374 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 2.5e-24 116.3 79 75.9
TWI74G1082 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 5.5e-24 115.2 79 75.9
Lj1g0021905 Lotus japonicus HOM05D000041 ORTHO05D000061 9.4e-24 114.4 80 76.2
FAN02G2937 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.2e-23 114.0 79 77.2
FAN05G3947 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.2e-23 114.0 79 77.2
Phvul.008G082400 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.2e-23 114.0 80 77.5
Manes.09G122900 Manihot esculenta HOM05D000041 ORTHO05D000061 2.7e-23 112.8 80 76.2
Prupe.6G295900 Prunus persica HOM05D000041 ORTHO05D000061 2.7e-23 112.8 79 73.4
RcHm_v2.0_Chr3g0460181 Rosa chinensis HOM05D000041 ORTHO05D000061 2.7e-23 112.8 79 75.9
VMungo1383G0808 Vigna mungo HOM05D000041 ORTHO05D000061 4.7e-23 112.1 80 76.2
MD04G1176400 Malus domestica HOM05D000041 ORTHO05D000061 6.1e-23 111.7 80 78.8
FvH4_6g09590 Fragaria vesca HOM05D000041 ORTHO05D000061 8.0e-23 111.3 79 75.9
Phvul.008G081000 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.0e-22 110.9 80 76.2
Gorai.011G124900 Gossypium raimondii HOM05D000041 ORTHO05D000061 1.4e-22 110.5 80 72.5
Lj2C57T8 Lonicera japonica HOM05D000041 ORTHO05D000061 1.4e-22 110.5 80 76.2
DCAR_018647 Daucus carota HOM05D000041 ORTHO05D000061 1.8e-22 110.2 80 75.0
Thecc.04G149600 Theobroma cacao HOM05D000041 ORTHO05D000061 1.8e-22 110.2 80 73.8
CSS0041001 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 3.0e-22 109.4 80 73.8
CSS0044255 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 3.0e-22 109.4 80 73.8
Dinv16960 Davidia involucrata HOM05D000041 ORTHO05D000061 3.0e-22 109.4 81 74.1
FAN09G4705 Fragaria x ananassa HOM05D000041 ORTHO05D000061 3.0e-22 109.4 79 74.7
Gohir.D10G113100 Gossypium hirsutum HOM05D000041 ORTHO05D000061 4.0e-22 109.0 80 71.2
MD12G1190700 Malus domestica HOM05D000041 ORTHO05D000061 4.0e-22 109.0 80 73.8
Glyma.09G273300 Glycine max HOM05D000041 ORTHO05D000061 1.2e-21 107.5 79 74.7
Potri.006G110000 Populus trichocarpa HOM05D000041 ORTHO05D000061 1.2e-21 107.5 81 75.3
TPR.G24337 Trifolium pratense HOM05D000041 ORTHO05D000061 1.2e-21 107.5 80 76.2
COL.COLO4_04754 Corchorus olitorius HOM05D000041 ORTHO05D000061 1.5e-21 107.1 80 75.0
Eucgr.A00782 Eucalyptus grandis HOM05D000041 ORTHO05D000061 1.5e-21 107.1 81 70.4
Ca_07772_v3 Cicer arietinum L. HOM05D000041 ORTHO05D000061 2.0e-21 106.7 80 72.5
Ca_07779_v3 Cicer arietinum L. HOM05D000041 ORTHO05D000061 2.0e-21 106.7 80 72.5
Gohir.A10G153100 Gossypium hirsutum HOM05D000041 ORTHO05D000061 2.0e-21 106.7 80 70.0
Manes.08G170100 Manihot esculenta HOM05D000041 ORTHO05D000061 2.0e-21 106.7 80 72.5
SalBow5G5521 Salvia bowleyana HOM05D000041 ORTHO05D000061 2.0e-21 106.7 79 69.6
Dinv25357 Davidia involucrata HOM05D000041 ORTHO05D000061 2.6e-21 106.3 80 72.5
CSS0009526 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 3.3e-21 105.9 79 72.2
Duzib151G0354 Durio zibethinus HOM05D000041 ORTHO05D000061 3.3e-21 105.9 80 73.8
Migut.J00023 Erythranthe guttata HOM05D000041 ORTHO05D000061 3.3e-21 105.9 80 68.8
Medtr7g073660 Medicago truncatula HOM05D000041 ORTHO05D000061 3.3e-21 105.9 80 72.5
Atru.chr8.83 Acer truncatum HOM05D000041 ORTHO05D000061 4.4e-21 105.5 82 73.2
Potri.016G138700 Populus trichocarpa HOM05D000041 ORTHO05D000061 5.7e-21 105.1 80 76.2
TAR633G0731 Trochodendron aralioides HOM05D000041 ORTHO05D000061 5.7e-21 105.1 80 68.8
Actinidia32571 Actinidia chinensis HOM05D000041 ORTHO05D026367 9.7e-21 104.4 80 71.2
Gohir.D02G106200 Gossypium hirsutum HOM05D000041 ORTHO05D000061 9.7e-21 104.4 80 71.2
Gorai.005G120700 Gossypium raimondii HOM05D000041 ORTHO05D000061 9.7e-21 104.4 80 71.2
MSTRG.18934 Avicennia marina HOM05D000041 ORTHO05D000061 1.3e-20 104.0 80 70.0
MSTRG.5485 Avicennia marina HOM05D000041 ORTHO05D000061 1.7e-20 103.6 79 68.4
Hma1.2p1_0174F.1_g076740 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 1.7e-20 103.6 80 71.2
Duzib268G0707 Durio zibethinus HOM05D000041 ORTHO05D000061 2.2e-20 103.2 79 70.9
Oeu007824.1 Olea europaea HOM05D000041 ORTHO05D000061 2.2e-20 103.2 80 72.5
Actinidia29023 Actinidia chinensis HOM05D000041 ORTHO05D000061 3.7e-20 102.4 81 70.4
DCAR_015328 Daucus carota HOM05D000041 ORTHO05D000061 3.7e-20 102.4 79 69.6
Glyma.18G215800 Glycine max HOM05D000041 ORTHO05D000061 4.8e-20 102.1 80 72.5
Peaxi162Scf00141g01024 Petunia axillaris HOM05D000041 ORTHO05D000061 4.8e-20 102.1 80 70.0
Peaxi162Scf00732g00240 Petunia axillaris HOM05D000041 ORTHO05D000061 4.8e-20 102.1 80 70.0
Nitab4.5_0002758g0020 Nicotiana tabacum HOM05D000041 ORTHO05D000061 6.3e-20 101.7 79 68.4
Nitab4.5_0024282g0010 Nicotiana tabacum HOM05D000041 ORTHO05D000061 6.3e-20 101.7 79 68.4
Gohir.A03G086900 Gossypium hirsutum HOM05D000041 ORTHO05D000061 8.2e-20 101.3 78 71.8
CAN.G496.7 Capsicum annuum HOM05D000041 ORTHO05D000061 1.4e-19 100.5 79 67.1
Ciclev10011034m.g Citrus clementina HOM05D000041 ORTHO05D000061 1.4e-19 100.5 81 70.4
MELO3C025229.2 Cucumis melo HOM05D000041 ORTHO05D000061 1.4e-19 100.5 80 72.5
CsaV3_4G027260 Cucumis sativus L. HOM05D000041 ORTHO05D000061 1.4e-19 100.5 80 72.5
Aqoxy4G03290 Aquilegia oxysepala HOM05D000041 ORTHO05D000061 1.8e-19 100.1 80 68.8
Solyc09g015830.3 Solanum lycopersicum HOM05D000041 ORTHO05D000061 1.8e-19 100.1 80 70.0
Sopen09g009970 Solanum pennellii HOM05D000041 ORTHO05D000061 1.8e-19 100.1 80 70.0
PGSC0003DMG400029885 Solanum tuberosum HOM05D000041 ORTHO05D000061 1.8e-19 100.1 80 70.0
Sed0000861 Sechium edule HOM05D000041 ORTHO05D000061 2.4e-19 99.8 80 71.2
PGR031G0322 Punica granatum HOM05D000041 ORTHO05D000061 3.1e-19 99.4 79 67.1
SGA_v2.0_scaffold373G50189 Striga asiatica HOM05D000041 ORTHO05D000061 4.1e-19 99.0 79 68.4
TAR636G2678 Trochodendron aralioides HOM05D000041 ORTHO05D000061 4.1e-19 99.0 81 66.7
SalBow5G1167 Salvia bowleyana HOM05D000041 ORTHO05D000061 5.3e-19 98.6 60 80.0
Actinidia20801 Actinidia chinensis HOM05D000041 ORTHO05D000061 1.2e-18 97.4 80 66.2
Oeu063845.1 Olea europaea HOM05D000041 ORTHO05D000061 1.6e-18 97.1 79 65.8
CAN.G23.9 Capsicum annuum HOM05D000041 ORTHO05D000061 5.9e-18 95.1 79 67.1
CANSAT21G1706 Cannabis sativa HOM05D000041 ORTHO05D000061 7.7e-18 94.7 71 70.4
Rhsim04G0120900 Rhododendron simsii HOM05D000041 ORTHO05D000061 7.7e-18 94.7 80 66.2
Rhsim05G0232200 Rhododendron simsii HOM05D000041 ORTHO05D000061 1.0e-17 94.4 81 66.7
Ah.08g209210 Amaranthus hybridus HOM05D000041 ORTHO05D000061 1.3e-17 94.0 79 67.1
EL10Ac7g17125 Beta vulgaris HOM05D000041 ORTHO05D000061 1.3e-17 94.0 79 67.1
Gohir.D09G215200 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.7e-17 93.6 84 66.7
Gorai.006G235700 Gossypium raimondii HOM05D000041 ORTHO05D000061 1.7e-17 93.6 84 66.7
Gohir.A09G213666 Gossypium hirsutum HOM05D000041 ORTHO05D000061 2.2e-17 93.2 84 65.5
Sc20g0007110 Simmondsia chinensis HOM05D000041 ORTHO05D000061 5.0e-17 92.0 90 60.0
Hma1.2p1_0537F.1_g174250 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 1.1e-16 90.9 82 64.6
ECA247G0653 Erigeron canadensis HOM05D000041 ORTHO05D000061 1.5e-16 90.5 81 67.9
Sp5g10700 Schrenkiella parvula HOM05D000041 ORTHO05D000061 3.2e-16 89.4 82 64.6
Actinidia11497 Actinidia chinensis HOM05D000041 ORTHO05D000061 5.5e-16 88.6 80 65.0
Ah.15g089880 Amaranthus hybridus HOM05D000041 ORTHO05D000061 7.2e-16 88.2 79 63.3
BraA09t39928Z Brassica rapa HOM05D000041 ORTHO05D000061 7.2e-16 88.2 82 63.4
AL5G31990 Arabidopsis lyrata HOM05D000041 ORTHO05D000061 9.4e-16 87.8 82 63.4
PGR004G2412 Punica granatum HOM05D000041 ORTHO05D000061 1.2e-15 87.4 80 61.2
AUR62006435 Chenopodium quinoa HOM05D000041 ORTHO05D000061 1.6e-15 87.0 82 65.9
AUR62029790 Chenopodium quinoa HOM05D000041 ORTHO05D000061 1.6e-15 87.0 82 65.9
AT3G51550 Arabidopsis thaliana HOM05D000041 ORTHO05D000061 2.1e-15 86.7 82 62.2
Carub.0005s1793 Capsella rubella HOM05D000041 ORTHO05D000061 2.1e-15 86.7 82 63.4
Aa31LG1G12610 Aethionema arabicum HOM05D000041 ORTHO05D000061 2.7e-15 86.3 57 75.4
HanXRQChr10g0287671 Helianthus annuus HOM05D000041 ORTHO05D000061 2.7e-15 86.3 81 66.7
Lsat_1_v5_gn_9_39720 Lactuca sativa HOM05D000041 ORTHO05D000061 2.7e-15 86.3 81 64.2
A09p44680 Brassica napus HOM05D000041 ORTHO05D000061 4.7e-15 85.5 82 62.2
C08p26780 Brassica napus HOM05D000041 ORTHO05D000061 4.7e-15 85.5 82 62.2
BolC8t50291H Brassica oleracea HOM05D000041 ORTHO05D000061 4.7e-15 85.5 82 62.2
Cc06_g00290 Coffea canephora HOM05D000041 ORTHO05D000061 4.7e-15 85.5 87 59.8
BcaC06g33028 Brassica carinata HOM05D000041 ORTHO05D000061 6.1e-15 85.1 82 63.4
C07p46360 Brassica napus HOM05D000041 ORTHO05D000061 6.1e-15 85.1 83 65.1
CARHR161130 Cardamine hirsuta HOM05D000041 ORTHO05D000061 6.1e-15 85.1 82 61.0
HanXRQChr15g0464731 Helianthus annuus HOM05D000041 ORTHO05D000061 6.1e-15 85.1 81 64.2
Lalb_Chr19g0123981 Lupinus albus HOM05D000041 ORTHO05D000061 6.1e-15 85.1 84 64.3
A03p48330 Brassica napus HOM05D000041 ORTHO05D000061 8.0e-15 84.7 85 61.2
BraA03t13941Z Brassica rapa HOM05D000041 ORTHO05D000061 8.0e-15 84.7 85 61.2
BcaB01g00506 Brassica carinata HOM05D000041 ORTHO05D000061 1.0e-14 84.3 82 62.2
BcaC04g20274 Brassica carinata HOM05D000041 ORTHO05D000061 1.4e-14 84.0 86 62.8
BolC7t45154H Brassica oleracea HOM05D000041 ORTHO05D000061 2.3e-14 83.2 86 61.6
CARHR161120 Cardamine hirsuta HOM05D000041 ORTHO05D000061 2.3e-14 83.2 81 60.5
MBI15_g32289_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 2.3e-14 83.2 84 60.7
CiPaw.13G149100 Carya illinoinensis HOM05D000041 ORTHO05D000061 3.0e-14 82.8 84 54.8
THA.LOC104806648 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 3.0e-14 82.8 82 57.3
A01p23370 Brassica napus HOM05D000041 ORTHO05D000061 6.8e-14 81.6 83 60.2
BraA01t02245Z Brassica rapa HOM05D000041 ORTHO05D000061 6.8e-14 81.6 83 60.2
PSO339G4454 Papaver somniferum HOM05D000041 ORTHO05D000061 8.8e-14 81.3 77 64.9
Lalb_Chr03g0043801 Lupinus albus HOM05D000041 ORTHO05D000061 1.2e-13 80.9 68 75.0
Sed0020985 Sechium edule HOM05D000041 ORTHO05D000061 1.5e-13 80.5 84 61.9
PSO384G3785 Papaver somniferum HOM05D000041 ORTHO05D000061 2.6e-13 79.7 77 63.6
Lalb_Chr01g0023781 Lupinus albus HOM05D000041 ORTHO05D000061 3.7e-12 75.9 83 59.0
Nn5g26817 Nelumbo nucifera HOM05D000041 ORTHO05D000061 1.8e-11 73.6 76 57.9
Cpa.g.sc86.74 Carica papaya HOM05D000041 ORTHO05D000061 9.1e-11 71.2 86 46.5
unitig_8.g3274 Utricularia gibba HOM05D000041 ORTHO05D026367 2.0e-10 70.1 79 51.9
MBI03_g15245_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 7.7e-10 68.2 80 55.0
Medtr4g111925 Medicago truncatula HOM05D000041 ORTHO05D000061 1.3e-09 67.4 86 47.7
CDE06G1823 Ceratophyllum demersum HOM05D000041 ORTHO05D000061 1.7e-09 67.0 58 63.8
Thhalv10010114m.g Eutrema salsugineum HOM05D000041 ORTHO05D000061 2.3e-09 66.6 83 54.2
SHI12944 Sapria himalayana HOM05D000041 ORTHO05D000061 2.3e-09 66.6 81 51.9
PSO017G5639 Papaver somniferum HOM05D000041 ORTHO05D000061 1.9e-08 63.5 55 65.5
PSO170G5224 Papaver somniferum HOM05D000041 ORTHO05D000061 4.2e-08 62.4 77 51.9
CDE07G1596 Ceratophyllum demersum HOM05D000041 ORTHO05D000061 7.2e-08 61.6 56 58.9
ATR1127G092 Amborella trichopoda HOM05D000041 ORTHO05D000061 9.5e-08 61.2 65 60.0
HPP92_001641 Vanilla planifolia HOM05D000041 ORTHO05D000061 1.6e-07 60.5 44 75.0
HPP92_001669 Vanilla planifolia HOM05D000041 ORTHO05D000061 1.6e-07 60.5 44 75.0
C01p29010 Brassica napus HOM05D000041 ORTHO05D000061 8.0e-07 58.2 70 54.3
BolC1t02833H Brassica oleracea HOM05D000041 ORTHO05D000061 8.0e-07 58.2 70 54.3
TAR629G2169 Trochodendron aralioides HOM05D000041 ORTHO05D000061 8.0e-07 58.2 86 48.8
Zm00001eb015930 Zea mays HOM05D000041 ORTHO05D000061 5.2e-06 55.5 78 52.6
Zm00001eb395240 Zea mays HOM05D000041 ORTHO05D000061 5.2e-06 55.5 81 53.1
MBI15_g32293_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D011664 6.8e-06 55.1 27 92.6
Os01g0769700 Oryza sativa ssp. japonica HOM05D000041 ORTHO05D000061 8.8e-06 54.7 80 50.0
THA.LOC104823325 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 8.8e-06 54.7 40 62.5


User provided reference genes

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