Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 0.0e+00 1138.6 600 100.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.2e-311 1072.4 700 84.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 9.1e-286 986.5 599 86.3
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.6e-285 984.9 599 86.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.0e-281 973.0 566 89.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.3e-278 960.7 600 84.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 9.1e-278 959.9 600 83.7
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.8e-276 954.5 600 83.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 6.5e-276 953.7 604 82.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.6e-274 948.0 600 82.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.4e-273 946.0 600 82.7
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.3e-273 945.3 596 83.1
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.0e-273 944.9 600 82.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 7.0e-270 933.7 601 82.0
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.0e-269 932.2 600 81.2
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.3e-268 928.7 600 81.2
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.9e-268 928.3 593 81.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.1e-267 926.4 600 80.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.2e-267 924.9 600 80.8
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 4.2e-267 924.5 606 80.5
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 5.5e-267 924.1 600 81.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.6e-266 921.4 593 80.3
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.2e-264 916.4 600 81.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.7e-264 914.1 600 81.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.7e-264 914.1 601 79.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.7e-264 914.1 595 80.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.3e-263 912.9 593 81.6
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.7e-263 912.5 600 81.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.8e-263 911.8 592 81.9
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 6.3e-263 910.6 600 80.0
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.1e-262 909.8 593 80.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.4e-262 909.4 600 81.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 9.2e-262 906.7 595 81.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-261 906.4 592 80.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.2e-261 906.4 601 79.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-261 905.6 600 79.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.0e-261 905.6 602 79.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.5e-261 904.4 600 81.2
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-260 902.9 600 80.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.3e-260 902.1 601 79.2
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.6e-260 900.6 597 79.7
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 8.6e-260 900.2 600 80.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-259 899.4 600 79.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.5e-259 899.4 592 79.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.6e-259 897.5 592 79.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.2e-258 896.3 600 79.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.4e-256 887.9 600 77.8
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.7e-256 887.5 600 78.0
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-255 884.8 600 77.5
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 7.0e-254 880.6 636 74.7
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.0e-253 879.0 601 78.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.7e-252 875.9 600 78.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.6e-252 874.0 600 78.0
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.6e-252 874.0 705 68.2
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.3e-251 871.7 600 77.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-250 869.4 600 76.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.1e-250 869.0 592 77.4
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.6e-250 868.2 590 78.0
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 8.0e-250 867.1 599 76.6
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.7e-247 858.2 596 75.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.4e-246 856.3 590 77.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.5e-245 851.7 596 74.7
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 6.0e-245 850.9 596 74.8
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.0e-244 850.1 596 74.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.7e-244 849.4 596 75.0
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.0e-244 848.6 575 78.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.9e-243 845.9 596 74.5
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.9e-243 845.9 595 74.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 3.3e-243 845.1 593 75.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 4.3e-243 844.7 602 74.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 4.3e-243 844.7 595 74.5
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 5.6e-243 844.3 603 74.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 7.3e-243 844.0 601 75.4
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 9.5e-243 843.6 597 74.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.1e-242 842.4 599 74.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.1e-241 840.1 598 74.9
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-241 839.7 597 74.2
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-241 839.7 597 74.4
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.8e-241 839.3 600 76.2
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.3e-241 839.0 569 77.0
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.1e-241 838.6 602 73.6
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.2e-240 836.6 596 74.3
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-240 835.5 599 74.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 4.9e-239 831.2 600 74.5
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 7.1e-238 827.4 598 73.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.2e-237 826.6 599 74.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.1e-237 825.9 601 73.9
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.1e-237 825.9 593 73.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.6e-237 824.7 602 74.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 7.8e-237 823.9 601 73.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 7.8e-237 823.9 510 83.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-236 822.4 597 73.7
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.0e-236 822.0 580 75.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.9e-236 821.6 579 74.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 8.6e-236 820.5 595 73.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 4.3e-235 818.1 621 72.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.6e-234 816.2 600 73.5
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.1e-234 815.8 601 73.0
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.1e-234 815.8 600 73.5
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.7e-234 814.7 600 73.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.4e-233 812.4 601 73.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.5e-232 809.7 602 72.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.7e-231 806.2 600 72.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.9e-231 804.7 601 72.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.1e-230 803.5 600 72.7
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 4.1e-230 801.6 602 72.1
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 9.2e-230 800.4 595 73.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.2e-229 800.0 602 71.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.5e-229 798.5 599 72.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.0e-229 797.7 601 71.4
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.2e-225 784.6 601 71.9
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.4e-222 775.8 513 78.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.0e-216 756.1 581 68.3
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.9e-214 749.6 601 67.7
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.3e-211 738.8 590 67.1
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.8e-210 735.7 583 68.8
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.4e-209 733.4 600 67.0
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 7.9e-205 717.6 594 66.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 7.6e-200 701.0 606 65.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.8e-194 682.6 526 68.6
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.0e-183 647.5 508 69.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.3e-179 632.5 449 73.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-177 626.7 434 77.6
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.4e-177 626.3 582 64.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.9e-174 616.7 480 68.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 4.5e-168 595.5 508 66.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-157 560.5 383 78.6
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.5e-155 553.9 542 58.3
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 2.3e-151 540.0 373 75.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.1e-137 494.6 521 52.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.5e-131 471.9 400 65.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 7.8e-128 461.8 326 77.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 8.1e-117 425.2 311 73.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.9e-113 414.1 254 86.6
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.5e-107 394.4 529 46.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 5.3e-92 342.8 556 40.1
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-92 342.0 231 75.3
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.8e-90 336.7 232 76.3
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.5e-78 298.1 226 71.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 6.5e-74 282.7 210 68.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 5.7e-62 243.0 259 51.4
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.9e-55 220.3 350 40.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 4.0e-47 193.7 133 76.7
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.7e-45 187.2 267 43.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 6.3e-45 186.4 132 72.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 6.6e-34 149.8 112 68.8
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.0e-31 142.5 133 61.7
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 3.4e-30 137.5 110 64.5
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 5.4e-28 130.2 187 47.1
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.9e-25 121.7 205 42.9
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 6.0e-19 100.1 83 63.9
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.9e-15 86.3 51 80.4
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-14 85.1 48 91.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 3.2e-12 77.8 74 56.8
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 4.1e-12 77.4 74 56.8
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 2.7e-11 74.7 85 52.9
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.7e-11 74.7 74 55.4
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 8.6e-10 69.7 59 61.0
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.6e-09 67.0 55 60.0
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.1e-07 61.2 66 45.5
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 3.4e-06 57.8 51 66.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 5.8e-06 57.0 57 45.6


User provided reference genes

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