Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 9.5e-127 456.8 227 100.0
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.5e-119 432.2 227 95.6
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 3.4e-60 235.7 234 58.1
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 4.5e-60 235.3 234 58.1
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 1.3e-54 217.2 195 55.4
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 2.6e-52 209.5 221 53.8
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.4e-52 209.1 195 53.8
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.5e-52 208.8 195 53.8
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 5.0e-51 205.3 190 58.4
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 5.5e-50 201.8 215 50.7
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 7.2e-50 201.4 195 57.4
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.6e-49 200.3 195 52.3
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 2.7e-49 199.5 199 54.3
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 2.0e-47 193.4 218 50.9
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.3e-46 190.7 198 50.5
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.7e-46 190.3 202 51.5
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 3.7e-46 189.1 195 55.4
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 4.8e-46 188.7 220 50.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.4e-45 186.4 194 46.9
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 5.3e-45 185.3 218 49.5
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 5.3e-45 185.3 220 49.5
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 7.7e-44 181.4 197 52.3
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.3e-43 180.6 208 53.4
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 8.5e-43 177.9 189 52.4
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.5e-42 176.4 217 47.0
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.2e-41 174.1 199 53.8
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.6e-41 173.7 193 50.3
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.1e-41 173.3 232 47.0
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 4.7e-41 172.2 235 46.4
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 8.0e-41 171.4 204 49.5
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 3.0e-40 169.5 226 43.4
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 3.0e-40 169.5 234 46.2
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 3.0e-40 169.5 191 47.6
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 4.0e-40 169.1 206 48.1
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.5e-39 167.2 208 47.6
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 2.2e-38 163.3 226 43.8
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 2.2e-38 163.3 218 45.4
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 6.3e-38 161.8 199 47.2
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.1e-37 161.0 200 48.0
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 4.1e-37 159.1 197 47.2
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 5.3e-37 158.7 196 49.0
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.2e-36 157.5 208 44.2
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.5e-36 156.0 200 47.0
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.2e-35 153.3 197 48.2
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 3.8e-35 152.5 237 41.8
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 5.5e-34 148.7 194 45.9
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 1.6e-33 147.1 198 43.9
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 8.0e-33 144.8 197 44.7
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.4e-32 144.1 202 44.6
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 4.0e-32 142.5 202 46.0
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 5.2e-32 142.1 214 41.6
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.4e-31 139.4 196 43.9
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.4e-31 139.4 196 43.4
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 4.4e-31 139.0 197 45.2
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 2.8e-30 136.3 219 42.9
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.8e-30 136.3 193 42.0
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.4e-29 134.0 211 43.1
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.4e-29 134.0 198 42.4
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.4e-29 134.0 198 42.4
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 5.4e-29 132.1 214 42.5
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 9.1e-29 131.3 203 41.9
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 2.0e-28 130.2 214 42.5
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.0e-28 130.2 156 51.3
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 5.9e-28 128.6 194 42.8
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 7.7e-28 128.3 190 44.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 6.5e-27 125.2 202 41.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 6.5e-27 125.2 208 44.2
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.5e-26 123.2 236 34.7
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 9.4e-26 121.3 217 35.0
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.6e-25 120.6 245 34.3
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.7e-25 119.0 199 40.2
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.0e-24 117.9 193 39.4
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 3.4e-23 112.8 195 37.9
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.3e-22 110.9 164 42.1
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 1.3e-22 110.9 225 37.8
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.4e-21 107.5 225 37.3
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 7.0e-21 105.1 202 38.1
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.6e-20 104.0 204 37.3
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 7.7e-20 101.7 201 38.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.3e-19 100.1 195 35.4
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 1.1e-18 97.8 195 34.9
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 5.6e-18 95.5 154 40.3
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 6.1e-17 92.0 229 34.5
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 6.8e-16 88.6 204 38.2
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.4e-15 86.3 161 37.9
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.7e-14 84.0 162 35.8
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.7e-14 84.0 136 39.7
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.9e-14 83.2 143 38.5
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 2.9e-14 83.2 180 31.1
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 3.7e-14 82.8 153 39.9
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.1e-13 81.3 161 35.4
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.1e-13 81.3 99 42.4
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.1e-13 81.3 175 34.3
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.8e-13 80.5 141 37.6
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 2.4e-13 80.1 121 45.5
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 5.4e-13 79.0 171 35.1
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 7.0e-13 78.6 201 33.8
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 7.0e-13 78.6 134 38.1
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 4.6e-12 75.9 131 36.6
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 5.9e-12 75.5 81 50.6
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 7.8e-12 75.1 214 33.2
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.0e-11 74.7 173 35.3
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.3e-11 74.3 103 46.6
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.3e-11 74.3 178 33.1
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 1.7e-11 73.9 138 36.2
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 3.0e-11 73.2 81 50.6
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 3.9e-11 72.8 82 46.3
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 1.9e-10 70.5 232 31.5
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 4.3e-10 69.3 147 36.1
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 9.5e-10 68.2 189 29.6
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 1.8e-08 63.9 252 29.0
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 4.0e-08 62.8 94 44.7
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 5.2e-08 62.4 155 35.5
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 1.2e-07 61.2 96 44.8
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 1.5e-07 60.8 88 45.5
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 1.5e-07 60.8 88 45.5
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 2.0e-07 60.5 86 45.3
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 9.8e-07 58.2 94 42.6


User provided reference genes

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