Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 8.3e-114 413.7 205 100.0
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.1e-109 399.1 227 89.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.9e-102 375.9 204 90.7
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.4e-99 365.2 205 87.3
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 7.6e-99 364.0 205 85.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.6e-96 356.3 205 85.4
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.3e-95 353.2 205 85.4
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.0e-95 352.1 204 82.8
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.1e-95 351.3 205 83.9
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.6e-93 345.1 206 80.1
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 5.2e-92 341.3 205 79.5
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.9e-92 340.9 205 79.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.0e-91 339.3 205 82.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.0e-91 339.3 205 82.4
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.4e-91 338.6 205 78.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 5.8e-91 337.8 205 78.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.9e-91 337.0 205 78.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.9e-90 335.5 205 81.0
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.8e-90 335.1 205 81.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 4.9e-90 334.7 206 78.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.4e-89 333.2 207 77.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 7.1e-89 330.9 203 77.3
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 9.3e-89 330.5 204 78.4
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-88 330.1 204 75.5
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 6.0e-88 327.8 205 78.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.7e-87 326.2 205 76.1
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.3e-87 325.9 204 77.5
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.0e-87 325.5 204 76.5
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.9e-87 325.1 205 75.1
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.1e-86 323.6 205 75.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.5e-86 323.2 203 74.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-86 323.2 205 75.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-86 323.2 205 75.1
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.9e-86 322.8 205 75.6
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.3e-86 322.0 205 73.7
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 74.6
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.3e-86 320.9 203 75.4
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 9.6e-86 320.5 205 74.6
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.3e-85 320.1 204 76.5
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-85 319.3 203 73.9
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.8e-85 318.9 205 74.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.6e-85 318.5 203 74.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.6e-85 318.5 203 74.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 6.2e-85 317.8 203 73.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.4e-84 316.6 205 78.5
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.4e-84 316.6 207 74.4
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.4e-84 315.8 206 74.8
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 4.0e-84 315.1 203 72.4
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.0e-84 315.1 206 74.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 5.3e-84 314.7 203 75.4
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 5.3e-84 314.7 203 75.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 5.3e-84 314.7 193 77.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 9.0e-84 313.9 203 72.9
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.2e-83 313.5 202 72.8
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 71.7
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 73.2
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.5e-83 313.2 203 72.9
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.5e-83 313.2 205 74.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.5e-83 313.2 202 75.2
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.5e-83 313.2 257 63.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.0e-83 312.8 203 72.9
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 74.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 72.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 72.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 72.9
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 4.5e-83 311.6 203 71.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 4.5e-83 311.6 203 71.9
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.8e-83 311.2 203 73.4
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 7.6e-83 310.8 202 72.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.7e-82 309.7 206 72.8
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 72.4
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 72.4
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 72.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.2e-82 309.3 201 74.1
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.2e-82 309.3 202 73.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 2.9e-82 308.9 203 72.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 72.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 74.3
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 73.9
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 4.9e-82 308.1 195 75.4
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 71.9
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 8.4e-82 307.4 207 73.9
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 8.4e-82 307.4 201 73.1
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.4e-81 306.6 201 74.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 72.2
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 74.1
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.2e-81 305.4 205 73.2
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 71.9
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 3.2e-81 305.4 201 74.6
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 5.4e-81 304.7 205 76.1
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.6e-80 303.1 206 72.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.7e-80 302.4 202 71.8
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 206 68.4
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 7.9e-80 300.8 205 67.3
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 7.9e-80 300.8 209 71.8
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.3e-79 300.1 206 71.4
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.8e-79 299.7 206 71.8
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.3e-79 299.3 206 68.0
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.9e-79 298.5 213 67.6
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.9e-79 298.5 202 71.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.1e-79 298.1 205 72.2
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 205 71.7
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.5e-78 296.6 197 71.6
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 9.6e-78 293.9 206 71.4
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-78 293.9 205 70.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.6e-77 293.1 208 67.8
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.3e-76 288.1 203 69.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.3e-76 288.1 204 70.1
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 9.0e-76 287.3 205 68.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 7.6e-75 284.3 205 64.4
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.5e-73 278.1 207 66.7
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.1e-72 276.2 203 66.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.7e-72 275.8 203 66.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.6e-72 275.0 204 68.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 6.2e-69 264.6 204 58.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.8e-68 263.1 207 60.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.6e-67 257.7 194 65.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.6e-64 250.0 209 60.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.7e-64 249.2 206 61.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-60 236.9 147 79.6
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 8.5e-58 227.6 214 52.3
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.5e-57 226.1 140 81.4
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 3.6e-56 222.2 205 59.5
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.0e-55 219.2 208 54.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 5.7e-54 214.9 137 75.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 7.4e-54 214.5 210 51.0
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.3e-52 208.4 145 73.8
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.9e-51 204.9 149 74.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.3e-50 203.8 142 71.8
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.9e-47 192.2 149 62.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.0e-42 177.6 128 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.4e-41 173.7 206 44.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.0e-39 167.5 182 52.2
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.1e-28 131.0 99 64.6
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.7e-27 126.3 193 37.3
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.0e-26 124.4 195 37.4
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.1e-25 120.9 135 49.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.2e-25 119.4 66 81.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.3e-23 113.2 77 62.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 5.7e-22 108.6 69 73.9
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 7.5e-22 108.2 200 35.5
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 9.8e-22 107.8 128 43.8
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-18 97.8 69 71.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 9.5e-17 91.3 63 69.8
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 8.0e-16 88.2 51 76.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.7e-11 73.2 50 70.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.7e-11 73.2 50 70.0
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 7.8e-11 71.6 70 62.9
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.5e-09 67.4 120 33.3
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.9e-09 67.0 51 60.8
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.3e-09 65.9 69 52.2
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 2.0e-06 57.0 81 40.7
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 9.8e-06 54.7 71 50.7


User provided reference genes

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