Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 2.6e-186 655.2 320 100.0
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 1.9e-173 612.5 302 98.7
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 4.3e-165 584.7 302 92.7
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 6.1e-164 580.9 302 91.7
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 8.0e-164 580.5 302 91.7
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 1.8e-163 579.3 302 91.7
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 1.5e-162 576.2 302 91.7
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 1.5e-162 576.2 302 91.1
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 2.6e-162 575.5 302 91.1
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 5.7e-162 574.3 302 89.7
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 5.7e-162 574.3 302 91.1
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 7.5e-162 573.9 302 91.4
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 2.2e-161 572.4 302 90.7
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 2.9e-161 572.0 302 90.4
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 6.4e-161 570.9 302 91.1
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 1.4e-160 569.7 302 89.7
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 5.4e-160 567.8 302 88.7
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 1.2e-159 566.6 302 90.1
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 2.7e-159 565.5 302 88.4
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 3.5e-159 565.1 302 89.4
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 4.6e-159 564.7 302 88.1
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 7.8e-159 563.9 302 88.4
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 1.3e-158 563.1 302 88.1
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 1.7e-158 562.8 302 88.7
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 1.7e-158 562.8 302 88.7
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 2.3e-158 562.4 293 91.5
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 3.0e-158 562.0 302 89.1
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 6.6e-158 560.8 302 87.7
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 1.1e-157 560.1 302 87.4
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 1.1e-157 560.1 302 87.7
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 1.5e-157 559.7 302 88.4
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 1.9e-157 559.3 305 87.9
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 4.3e-157 558.1 302 86.8
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 9.5e-157 557.0 302 87.4
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 9.5e-157 557.0 303 87.8
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 1.2e-156 556.6 302 86.8
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 1.2e-156 556.6 302 87.7
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 2.8e-156 555.4 302 87.1
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 2.8e-156 555.4 302 87.1
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 8.0e-156 553.9 302 86.8
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 1.4e-155 553.1 302 87.7
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 1.4e-155 553.1 302 86.4
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 3.1e-155 552.0 302 86.4
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 3.1e-155 552.0 302 86.4
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 4.0e-155 551.6 302 86.8
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 1.2e-154 550.1 302 86.4
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 3.4e-154 548.5 313 84.0
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 4.4e-154 548.1 309 84.1
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 7.5e-154 547.4 360 76.7
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 7.5e-154 547.4 302 85.1
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 2.2e-153 545.8 301 88.0
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 3.7e-153 545.0 301 86.0
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 3.7e-153 545.0 302 85.8
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 6.4e-153 544.3 302 86.1
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 1.9e-152 542.7 301 86.7
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.9e-152 542.7 301 86.7
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 1.9e-152 542.7 302 85.8
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.4e-152 542.3 301 86.7
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 4.1e-152 541.6 302 84.1
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 4.1e-152 541.6 302 85.1
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 9.2e-152 540.4 302 85.1
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 1.2e-151 540.0 302 85.8
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 3.5e-151 538.5 301 86.0
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 3.5e-151 538.5 387 70.5
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 3.5e-151 538.5 301 86.0
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 7.8e-151 537.3 337 78.6
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 1.7e-150 536.2 302 84.4
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 6.6e-150 534.3 302 84.8
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 4.3e-149 531.6 302 83.8
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 6.2e-148 527.7 303 82.8
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 1.8e-147 526.2 303 82.5
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 6.8e-147 524.2 301 84.4
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 1.2e-146 523.5 303 81.2
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 1.2e-146 523.5 303 81.8
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 1.5e-146 523.1 303 81.2
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 5.8e-146 521.2 304 81.6
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 9.8e-146 520.4 302 80.8
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 1.3e-145 520.0 344 73.8
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 3.7e-145 518.5 302 81.1
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 1.4e-144 516.5 302 79.5
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 2.4e-144 515.8 303 80.5
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 2.4e-144 515.8 303 80.5
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 2.4e-144 515.8 303 80.5
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 3.2e-144 515.4 303 80.2
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 5.4e-144 514.6 331 75.2
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 9.2e-144 513.8 303 79.9
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 1.6e-143 513.1 302 81.1
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 2.7e-143 512.3 302 79.1
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 1.5e-141 506.5 303 79.9
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 5.6e-141 504.6 303 79.5
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 7.3e-141 504.2 303 79.5
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 7.3e-141 504.2 303 79.5
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 2.1e-140 502.7 303 79.2
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 2.8e-140 502.3 315 74.0
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 1.1e-139 500.4 303 80.2
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 1.8e-139 499.6 315 74.3
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 2.3e-134 482.6 257 90.3
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 4.3e-133 478.4 306 73.2
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 2.6e-130 469.2 302 76.8
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 8.7e-126 454.1 280 77.9
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 4.3e-125 451.8 257 85.6
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 2.1e-119 433.0 306 69.0
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 6.7e-118 427.9 306 67.0
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 5.3e-115 418.3 266 76.7
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 1.3e-113 413.7 307 66.8
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 4.2e-112 408.7 307 64.8
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 2.7e-111 406.0 211 90.0
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 1.8e-102 376.7 317 59.9
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 4.5e-98 362.1 302 64.6
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 6.5e-97 358.2 193 89.6
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 1.4e-96 357.1 308 61.4
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 3.6e-95 352.4 185 93.5
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 7.9e-87 324.7 185 86.5
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 9.7e-69 264.6 152 78.9
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 8.2e-68 261.5 149 83.9
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 1.6e-63 247.3 154 75.3
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 1.1e-59 234.6 118 89.0
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 5.0e-57 225.7 126 82.5
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 1.2e-55 221.1 131 84.7
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 2.8e-47 193.4 318 39.0
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 1.2e-39 167.9 98 85.7
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 1.4e-35 154.5 117 68.4
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 2.5e-24 117.1 127 52.0
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 2.2e-20 104.0 79 68.4
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 6.2e-15 85.9 52 78.8
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 1.8e-14 84.3 51 72.5
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 5.2e-14 82.8 130 42.3
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 7.1e-11 72.4 286 26.9


User provided reference genes

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