Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.8e-137 490.7 259 100.0
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.2e-128 463.4 259 95.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 9.2e-102 374.0 259 79.2
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.6e-101 373.2 278 74.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 7.3e-91 337.8 259 70.7
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 8.7e-84 314.3 261 67.0
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 4.3e-83 312.0 280 64.3
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-70 270.8 259 62.5
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.3e-68 263.1 264 59.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.9e-63 246.1 264 56.1
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.6e-61 240.4 269 55.8
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 5.1e-60 235.3 264 59.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 6.7e-60 235.0 262 53.1
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 6.7e-60 235.0 265 54.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 5.7e-59 231.9 262 56.1
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.7e-59 231.1 266 54.9
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.4e-57 227.3 265 52.8
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.8e-57 226.9 268 54.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 3.1e-57 226.1 291 52.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 9.0e-57 224.6 266 54.9
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.6e-56 223.0 263 54.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.9e-56 221.9 262 54.6
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 2.2e-55 219.9 263 52.5
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.2e-55 219.9 264 54.5
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 5.0e-55 218.8 261 54.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.1e-54 217.6 283 50.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.1e-54 217.6 261 52.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.4e-54 217.2 261 54.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.4e-54 217.2 267 53.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.9e-54 216.9 280 52.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 5.5e-54 215.3 268 50.4
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.6e-53 213.8 266 51.1
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.1e-53 213.4 263 51.3
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.1e-53 213.4 266 52.3
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.7e-53 213.0 271 52.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.6e-53 212.6 265 53.2
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.6e-53 212.2 264 52.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.8e-52 210.3 244 57.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.0e-52 209.5 257 52.5
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.1e-52 208.8 266 50.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 8.8e-52 208.0 268 52.6
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.1e-51 207.6 264 53.0
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-51 207.6 261 51.7
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.5e-51 206.5 265 52.5
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 2.5e-51 206.5 265 52.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 4.3e-51 205.7 266 49.6
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.3e-50 204.1 262 50.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.7e-50 203.8 263 52.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.8e-50 203.0 274 50.0
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.8e-50 203.0 263 49.4
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.7e-50 202.6 264 52.7
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 8.2e-50 201.4 269 50.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.2e-50 201.4 268 50.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.4e-49 200.7 176 64.8
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.4e-49 199.9 260 51.5
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.1e-49 199.5 263 52.5
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.1e-49 199.1 264 51.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 5.3e-49 198.7 262 49.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 9.1e-49 198.0 263 52.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.2e-48 197.6 262 49.2
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.6e-48 196.4 260 50.4
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 5.9e-48 195.3 263 47.9
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.9e-48 195.3 261 51.7
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 3.8e-47 192.6 222 55.4
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.8e-47 192.6 261 51.7
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.4e-46 190.7 268 48.9
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.9e-46 190.3 267 48.7
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.5e-46 189.9 246 51.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.5e-46 189.9 269 50.6
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.2e-46 189.5 262 48.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 3.2e-46 189.5 264 50.8
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 4.2e-46 189.1 313 45.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.5e-46 188.7 267 48.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.7e-45 186.4 265 49.4
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.7e-45 186.4 309 43.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.7e-45 186.4 262 49.6
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.7e-45 185.7 267 49.1
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.1e-45 185.3 237 51.5
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 7.9e-45 184.9 279 48.7
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 3.0e-44 183.0 267 46.4
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 3.3e-43 179.5 272 47.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 3.3e-43 179.5 272 47.1
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 4.4e-43 179.1 256 50.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.7e-43 178.7 273 46.5
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 9.7e-43 177.9 268 48.1
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.7e-42 176.0 255 49.8
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 6.3e-42 175.3 310 43.2
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.4e-41 173.3 268 47.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.4e-41 173.3 264 48.1
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-41 172.9 258 46.9
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-41 172.9 258 46.9
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.0e-40 170.2 258 46.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-40 170.2 258 47.7
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-40 170.2 258 47.7
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 7.7e-40 168.3 206 46.6
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.3e-39 167.5 268 45.1
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.0e-39 165.6 254 46.1
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.5e-39 165.2 260 46.5
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.5e-39 165.2 270 45.2
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 8.5e-39 164.9 260 45.4
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 261 46.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-38 164.1 268 46.3
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-38 163.3 267 43.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.5e-38 163.3 258 48.1
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.2e-38 162.9 265 46.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 5.5e-38 162.2 264 46.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 5.5e-38 162.2 264 46.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 5.5e-38 162.2 266 45.1
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 9.4e-38 161.4 263 44.1
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 9.4e-38 161.4 266 44.4
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 9.4e-38 161.4 266 44.4
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 9.4e-38 161.4 263 44.1
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-37 161.0 261 46.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-37 160.6 268 43.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.6e-37 160.6 262 43.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.6e-37 160.6 261 47.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 2.1e-37 160.2 260 45.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-37 160.2 260 45.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.7e-37 159.8 267 43.8
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.7e-37 159.8 258 47.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.7e-37 159.8 260 45.8
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.6e-37 159.5 266 44.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.1e-37 158.7 264 44.3
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.0e-36 157.9 266 44.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.4e-36 157.5 267 43.8
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.8e-36 157.1 268 45.9
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.3e-36 156.8 271 43.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.3e-36 156.8 271 44.6
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.0e-36 156.4 241 46.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.7e-35 152.1 261 43.3
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.7e-35 151.4 262 44.7
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.7e-34 150.6 264 43.6
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-34 149.4 262 42.0
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.1e-33 146.4 268 45.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.1e-33 146.0 264 42.0
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-32 144.1 261 41.8
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-32 143.7 159 57.2
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.0e-31 141.4 259 42.9
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.1e-30 137.9 154 55.8
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.2e-30 136.3 276 41.3
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 9.4e-30 134.8 265 43.8
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 9.4e-30 134.8 264 39.8
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.1e-29 133.7 264 38.6
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 5.2e-28 129.0 294 37.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.4e-27 126.3 293 37.2
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.4e-27 125.9 260 38.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 7.5e-27 125.2 135 50.4
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 6.3e-26 122.1 269 38.7
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.4e-25 120.9 261 39.8
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.3e-25 119.0 263 38.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.2e-24 117.9 262 37.0
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.7e-24 116.7 261 38.7
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.5e-24 115.9 201 47.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 7.7e-24 115.2 122 54.9
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.5e-22 110.9 269 39.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.9e-22 110.5 262 34.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 9.4e-22 108.2 367 30.8
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.7e-21 106.7 261 36.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.3e-20 103.6 261 36.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.0e-20 102.8 160 45.0
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.0e-19 100.5 254 34.3
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.3e-18 95.1 259 32.8
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-17 94.4 259 32.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.0e-16 90.5 180 43.3
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 7.7e-16 88.6 261 34.9
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 5.0e-15 85.9 257 32.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.6e-15 85.1 257 36.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.2e-13 81.3 259 32.8
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.4e-12 77.8 71 60.6
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.3e-12 77.0 213 33.3
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.2e-11 74.7 70 62.9
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.5e-11 74.3 112 40.2
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 2.8e-10 70.1 146 41.1
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.4e-09 67.0 73 50.7
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.4e-09 65.9 86 51.2
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 7.0e-09 65.5 87 50.6
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.6e-08 64.3 203 35.0
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 4.5e-08 62.8 181 33.1
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 7.8e-08 62.0 165 32.7
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.8e-08 62.0 85 45.9
Medtr7g007430 Medicago truncatula HOM05D000048 ORTHO05D003885 7.8e-08 62.0 107 43.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.3e-07 60.5 101 45.5
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 6.6e-07 58.9 235 32.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 8.6e-07 58.5 227 29.5
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-06 58.2 57 63.2
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 5.6e-06 55.8 236 29.2


User provided reference genes

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