Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.3e-133 478.4 244 100.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-105 386.7 244 84.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.2e-84 316.2 250 66.8
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 9.1e-75 284.3 246 65.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 3.9e-62 242.3 245 58.0
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.3e-57 227.3 242 55.8
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.2e-57 226.5 250 54.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.2e-57 226.5 240 55.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.3e-54 216.5 250 48.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.7e-53 211.8 247 52.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.2e-52 209.9 248 52.4
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-52 209.1 243 52.3
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.8e-51 206.8 244 49.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.1e-51 204.5 252 49.6
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 7.7e-50 201.4 251 49.8
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.7e-50 201.4 250 49.6
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.7e-49 200.3 245 51.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.7e-49 200.3 214 52.8
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 9.4e-48 194.5 236 47.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.7e-47 193.0 257 48.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.7e-47 193.0 243 46.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.0e-46 189.1 250 50.0
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 6.8e-46 188.3 256 48.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.2e-45 187.6 222 51.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.4e-45 186.0 258 46.1
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.7e-44 183.7 255 42.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.7e-44 182.6 252 46.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.1e-43 179.5 252 46.4
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 4.1e-43 179.1 234 46.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-43 179.1 258 44.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.4e-43 178.7 255 42.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 7.0e-43 178.3 256 43.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.0e-43 178.3 258 43.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.6e-42 177.2 261 46.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.5e-42 175.6 252 45.2
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.7e-42 174.9 245 46.5
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.7e-42 174.9 248 44.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-41 173.7 258 42.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.3e-41 173.3 258 42.2
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.9e-41 172.9 265 44.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 6.6e-41 171.8 255 42.7
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 5.5e-40 168.7 265 46.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 9.5e-40 167.9 249 43.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 9.5e-40 167.9 249 43.0
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.2e-39 167.5 264 43.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.1e-39 166.8 250 42.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.6e-39 166.0 241 42.7
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 4.7e-39 165.6 253 45.1
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-38 163.7 255 39.6
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.0e-38 162.9 255 43.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.5e-37 160.6 257 42.4
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.5e-37 160.6 259 41.7
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.5e-37 160.6 266 42.1
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.0e-37 160.2 257 39.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 7.5e-37 158.3 265 38.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-36 156.4 259 42.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-36 156.4 257 42.4
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.8e-36 156.4 257 43.6
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.7e-36 156.0 227 40.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.9e-36 155.6 254 39.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.9e-36 155.6 259 42.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.3e-36 155.2 265 40.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 8.3e-36 154.8 253 43.5
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 8.3e-36 154.8 237 41.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 8.3e-36 154.8 250 43.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-35 154.5 251 42.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.1e-35 154.5 260 41.9
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.1e-35 154.5 253 43.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-35 154.1 253 43.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.8e-35 153.7 230 44.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.8e-35 153.7 249 41.0
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.8e-35 153.7 260 42.7
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.4e-35 153.3 254 40.2
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.1e-35 152.9 247 40.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.1e-35 152.9 260 41.5
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.1e-35 152.9 251 43.4
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.1e-35 152.5 263 45.6
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 4.1e-35 152.5 255 41.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.1e-35 152.5 269 36.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.1e-35 152.5 252 38.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 9.2e-35 151.4 246 41.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.2e-34 151.0 259 40.9
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-34 151.0 264 40.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-34 151.0 228 42.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-34 150.6 263 39.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.0e-34 150.2 241 39.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.7e-34 149.8 258 42.2
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.5e-34 149.1 255 42.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 4.5e-34 149.1 258 39.9
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.9e-34 148.7 224 41.5
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 7.8e-34 148.3 285 41.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.7e-33 147.1 241 41.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-33 146.7 251 41.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.3e-33 146.7 250 41.6
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.0e-33 145.6 239 41.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 8.6e-33 144.8 252 39.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.1e-32 144.4 244 39.8
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.1e-32 144.4 239 41.8
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.5e-32 143.3 280 38.2
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.5e-32 141.4 248 39.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.6e-31 139.4 243 40.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 8.0e-31 138.3 243 39.9
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.4e-30 137.5 236 39.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.3e-30 136.7 246 38.6
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.1e-30 136.3 248 38.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 4.0e-30 136.0 263 38.4
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.2e-30 135.6 242 41.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.8e-30 135.2 236 38.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.9e-30 134.8 252 38.9
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.0e-29 133.7 250 37.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.7e-28 130.6 267 40.4
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.2e-28 130.2 257 34.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.7e-28 129.4 253 38.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 4.9e-28 129.0 248 37.5
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.9e-28 129.0 255 36.5
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 8.3e-28 128.3 238 40.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.3e-28 128.3 242 36.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.1e-27 127.9 265 38.1
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.1e-27 127.9 220 37.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.9e-27 127.1 89 61.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.2e-27 126.3 206 39.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.0e-26 123.6 238 37.0
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 6.0e-26 122.1 246 37.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.7e-25 120.6 252 37.3
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 3.0e-25 119.8 241 34.0
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.9e-25 119.4 244 35.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 5.0e-25 119.0 287 34.1
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 8.6e-25 118.2 253 36.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.1e-24 117.9 251 35.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.3e-24 116.3 254 37.0
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.3e-24 115.9 249 34.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.3e-24 115.9 249 34.1
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.6e-24 115.5 271 36.5
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 7.3e-24 115.2 255 34.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-23 114.0 248 33.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-23 114.0 248 33.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.1e-23 113.6 257 35.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-23 113.6 251 36.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.6e-23 112.8 252 35.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 3.6e-23 112.8 249 33.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.6e-23 112.8 252 35.3
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 3.6e-23 112.8 255 34.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-22 110.5 249 33.3
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.8e-22 110.5 249 33.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.1e-22 109.8 249 33.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 4.4e-21 105.9 246 35.8
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 7.5e-21 105.1 239 31.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-20 102.8 249 36.9
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.7e-20 102.8 249 37.3
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.7e-20 102.8 249 36.9
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 6.4e-20 102.1 258 32.6
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.4e-19 100.1 199 36.7
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 4.6e-18 95.9 248 31.9
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-14 84.7 173 34.7
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.1e-14 84.7 173 34.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.4e-13 79.7 189 30.2
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-12 77.4 195 30.3
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.1e-10 70.5 153 32.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.3e-09 67.0 46 58.7
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.1e-09 65.9 117 41.0
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 2.8e-07 60.1 71 47.9
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.6e-07 59.7 124 40.3


User provided reference genes

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