Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 2107.4 1070 100.0
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1781.1 1024 90.7
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1694.1 1043 82.6
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1636.7 1069 79.0
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1367.4 1067 66.7
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1356.3 1055 66.0
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1349.7 1050 66.6
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1340.9 1062 66.6
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1329.3 1049 65.3
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1327.0 1070 66.4
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1312.4 1045 65.2
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1302.3 1064 64.3
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1297.0 1050 64.2
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1291.6 1064 63.6
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1288.9 1068 62.7
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1286.2 1068 62.5
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1284.2 1058 63.3
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1281.2 1067 62.6
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1279.2 1050 63.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1273.1 1050 62.5
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1263.4 1053 62.0
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1256.5 1053 61.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1246.1 1065 61.3
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1237.6 1056 61.2
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1231.9 1059 61.8
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1226.5 1074 61.0
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1225.7 1070 60.7
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1216.4 1074 60.9
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1216.4 1059 61.7
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1214.9 1052 61.5
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1202.6 1071 58.9
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1199.9 1069 59.1
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1191.4 1044 59.6
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1191.0 1073 59.9
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1174.1 1068 58.0
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1155.6 1054 58.0
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1153.7 1081 57.9
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1153.3 1081 57.7
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1122.1 1073 55.5
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1120.5 1053 56.1
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 0.0e+00 1117.4 1014 58.8
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 0.0e+00 1115.5 1047 55.4
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 0.0e+00 1111.3 1076 55.8
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 0.0e+00 1088.9 1065 54.2
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 0.0e+00 1087.4 1046 54.1
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 0.0e+00 1083.9 958 60.4
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 0.0e+00 1082.4 1066 52.6
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 7.3e-312 1074.7 1056 52.4
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 7.3e-312 1073.9 1050 54.2
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.1e-310 1070.1 1048 53.0
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 3.6e-309 1065.1 863 62.1
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.3e-306 1056.6 1047 53.6
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 1.8e-305 1052.7 1048 53.3
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 3.1e-305 1052.0 1050 53.1
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 1.2e-304 1050.0 1105 52.6
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 1.3e-303 1046.6 1058 53.3
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.2e-301 1040.0 1049 52.8
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.1e-301 1039.3 945 59.9
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 8.0e-301 1037.3 1072 52.0
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 5.2e-300 1034.6 1070 52.0
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.2e-300 1034.6 947 59.5
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 6.6e-295 1017.7 1026 53.1
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 7.3e-294 1014.2 822 63.9
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.9e-292 1007.3 821 61.5
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 8.6e-287 990.7 1079 49.4
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.8e-285 985.7 1045 52.7
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 8.9e-284 980.7 1048 50.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.3e-278 961.8 1052 50.3
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 1.2e-275 953.7 729 66.4
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.3e-271 940.3 1062 49.4
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 7.6e-267 924.5 1067 48.8
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.3e-266 923.7 1101 48.0
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.3e-266 923.7 1054 48.5
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 8.4e-266 921.0 919 53.1
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 8.7e-263 911.0 1079 47.5
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 8.1e-253 877.9 1107 45.8
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 5.8e-251 871.7 1059 46.2
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.3e-250 870.5 845 53.8
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 2.1e-240 836.6 922 49.0
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.5e-238 829.7 1054 44.6
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.3e-226 790.8 746 57.2
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 5.7e-206 722.2 624 59.9
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.0e-202 711.4 711 50.6
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.9e-201 707.2 736 52.6
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 8.0e-184 648.7 735 49.0
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.3e-183 647.1 871 44.4
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.3e-177 625.5 1047 37.4
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 3.6e-160 570.1 1110 34.1
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 8.7e-146 522.3 1283 29.9
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.9e-145 521.2 653 45.5
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.4e-137 492.7 455 59.3
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 8.1e-128 462.6 439 57.4
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.1e-111 409.1 347 61.1
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-110 404.8 390 55.6
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 4.5e-110 403.7 341 60.1
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.6e-107 393.7 583 42.2
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.9e-103 379.8 1190 29.7
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.9e-101 374.4 342 57.6
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.5e-97 362.1 343 58.3
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.5e-86 323.9 297 55.6
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 2.2e-80 305.1 366 45.9
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.5e-78 297.7 289 53.6
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 2.0e-70 271.9 271 55.7
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 2.7e-70 271.6 231 65.4
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.1e-59 235.3 261 49.4
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 5.2e-58 230.7 307 44.0
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.1e-55 221.1 365 39.7
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.4e-50 206.1 194 52.6
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 6.0e-46 190.7 254 44.5
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-44 186.4 138 63.8
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 2.4e-42 178.7 319 39.8
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 5.8e-41 174.1 130 62.3
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 2.4e-39 168.7 138 65.2
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 3.6e-35 154.8 103 65.0
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 6.9e-34 150.6 106 62.3
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 2.9e-32 145.2 398 28.9
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.1e-31 140.6 306 34.6
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.3e-29 135.6 134 58.2
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 6.7e-21 107.5 137 43.1
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.8e-19 101.3 171 39.2
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 5.8e-17 94.4 80 56.2
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.8e-17 94.4 80 56.2
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.8e-17 94.4 80 56.2
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.8e-17 94.4 136 41.9
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 6.0e-14 84.3 723 21.3
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-13 83.6 239 26.8
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.5e-12 79.7 94 51.1
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 3.3e-12 78.6 96 40.6
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 8.2e-11 73.9 65 52.3
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 1.9e-07 62.8 122 39.3
CBR_g34900 Chara braunii HOM05D002414 ORTHO05D002531 2.5e-07 62.4 300 26.7
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 4.2e-07 61.6 42 69.0
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.5e-07 61.2 47 51.1


User provided reference genes

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