Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 4.5e-88 327.8 155 100.0
Haze_19876 Corylus avellana HOM05D007687 ORTHO05D009692 3.3e-54 215.3 154 74.7
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 2.6e-51 205.7 173 62.4
Haze_18510 Corylus avellana HOM05D007687 ORTHO05D009692 5.4e-49 198.0 131 80.9
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 8.1e-45 184.1 214 50.5
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 1.4e-36 156.8 152 55.3
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 2.2e-34 149.4 169 49.7
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 2.1e-32 142.9 164 50.6
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 7.9e-32 141.0 203 44.3
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 3.0e-31 139.0 205 45.4
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 1.4e-28 130.2 198 41.4
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 3.1e-28 129.0 209 41.6
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 5.8e-27 124.8 196 40.3
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 2.2e-26 122.9 143 46.9
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 7.1e-25 117.9 202 38.1
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 9.3e-25 117.5 226 40.7
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 1.0e-23 114.0 141 48.9
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.0e-23 114.0 141 48.9
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 3.0e-23 112.5 135 49.6
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 1.1e-22 110.5 210 33.3
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 1.6e-21 106.7 173 39.3
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 2.8e-21 105.9 255 32.5
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 3.7e-21 105.5 167 41.9
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 8.2e-21 104.4 196 35.2
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 1.4e-20 103.6 145 42.1
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 2.4e-20 102.8 218 34.4
Gorai.006G268500 Gossypium raimondii HOM05D007687 ORTHO05D009692 1.5e-19 100.1 178 41.6
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 2.0e-19 99.8 176 38.1
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 3.4e-19 99.0 197 39.1
Gohir.A09G243800 Gossypium hirsutum HOM05D007687 ORTHO05D009692 3.4e-19 99.0 178 41.0
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 7.6e-19 97.8 175 36.6
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 1.0e-18 97.4 209 34.0
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.1e-17 94.0 160 42.5
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 1.4e-17 93.6 197 34.5
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 4.2e-17 92.0 204 35.8
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 4.2e-17 92.0 175 38.9
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 5.5e-17 91.7 165 38.8
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 9.3e-17 90.9 164 37.2
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 1.2e-16 90.5 164 37.2
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 2.7e-16 89.4 154 37.0
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 4.6e-16 88.6 176 35.8
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 6.1e-16 88.2 162 41.4
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 6.1e-16 88.2 91 52.7
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 1.3e-15 87.0 160 40.6
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.8e-15 86.7 153 39.9
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 2.3e-15 86.3 158 40.5
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 2.3e-15 86.3 148 39.2
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 2.3e-15 86.3 158 40.5
TPR.G7811 Trifolium pratense HOM05D007687 ORTHO05D009692 2.3e-15 86.3 133 42.9
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 5.1e-15 85.1 158 39.9
Glyma.05G018400 Glycine max HOM05D007687 ORTHO05D009692 8.7e-15 84.3 145 37.9
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 1.1e-14 84.0 184 33.2
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 1.9e-14 83.2 152 39.5
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 1.9e-14 83.2 221 29.9
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 1.9e-14 83.2 168 36.9
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 2.5e-14 82.8 160 36.9
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 4.3e-14 82.0 159 36.5
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 4.3e-14 82.0 161 38.5
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 4.3e-14 82.0 162 37.0
PGSC0003DMG400024621 Solanum tuberosum HOM05D007687 ORTHO05D009692 4.3e-14 82.0 216 30.6
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 7.4e-14 81.3 160 37.5
ClCG04G011570 Citrullus lanatus HOM05D007687 ORTHO05D009692 4.8e-13 78.6 143 39.9
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 6.3e-13 78.2 160 37.5
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 8.2e-13 77.8 153 37.9
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 8.2e-13 77.8 160 36.9
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 1.4e-12 77.0 160 37.5
SGA_v2.0_scaffold105G30431 Striga asiatica HOM05D007687 ORTHO05D009692 1.4e-12 77.0 124 35.5
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 2.4e-12 76.3 160 37.5
Cpa.g.sc3.233 Carica papaya HOM05D007687 ORTHO05D009692 6.9e-12 74.7 166 35.5
Medtr4g109950 Medicago truncatula HOM05D007687 ORTHO05D009692 9.0e-12 74.3 149 36.9
Aqoxy7G00617 Aquilegia oxysepala HOM05D035011 ORTHO05D031291 2.0e-11 73.2 171 29.2
Gorai.006G268600 Gossypium raimondii HOM05D007687 ORTHO05D009692 4.5e-11 72.0 226 27.0
TWI60G1328 Tripterygium wilfordii HOM05D007687 ORTHO05D009692 4.5e-11 72.0 180 33.9
unitig_8.g4497 Utricularia gibba HOM05D007687 ORTHO05D009692 8.5e-10 67.8 128 34.4
PGR031G0897 Punica granatum HOM05D007687 ORTHO05D009692 1.4e-09 67.0 199 31.2
Solyc03g114770.3 Solanum lycopersicum HOM05D007687 ORTHO05D009692 1.4e-09 67.0 185 29.7
Sopen03g033850 Solanum pennellii HOM05D007687 ORTHO05D009692 3.2e-09 65.9 186 29.6
Gohir.D09G244550 Gossypium hirsutum HOM05D007687 ORTHO05D009692 4.2e-09 65.5 230 28.7
Ah.11g047410 Amaranthus hybridus HOM05D024623 ORTHO05D023410 6.1e-08 61.6 57 49.1
Gohir.A09G243850 Gossypium hirsutum HOM05D007687 ORTHO05D009692 1.8e-07 60.1 201 27.9
PSO063G2070 Papaver somniferum HOM05D035011 ORTHO05D031291 3.0e-07 59.3 96 35.4
FAN13G2354 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.1e-06 57.4 103 38.8
unitig_578.g15936 Utricularia gibba HOM05D007687 ORTHO05D009692 1.1e-06 57.4 168 28.6
PSO782G3609 Papaver somniferum HOM05D035011 ORTHO05D031291 2.0e-06 56.6 94 35.1
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 2.5e-06 56.2 54 50.0
Medtr2g461480 Medicago truncatula HOM05D011573 ORTHO05D014451 3.3e-06 55.8 53 50.9
Atru.chr4.1593 Acer truncatum HOM05D007687 ORTHO05D009692 7.4e-06 54.7 146 35.6
Lsat_1_v5_gn_4_113740 Lactuca sativa HOM05D007687 ORTHO05D009692 9.7e-06 54.3 132 33.3
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 9.7e-06 54.3 55 49.1
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 9.7e-06 54.3 132 31.8


User provided reference genes

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