Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 7.5e-77 290.8 190 100.0
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.5e-72 276.6 190 96.8
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.1e-71 272.7 190 96.3
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.8e-70 267.7 189 94.2
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 8.4e-52 207.6 190 73.2
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.5e-48 196.8 195 60.0
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 4.3e-48 195.3 197 64.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 7.6e-45 184.5 195 67.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.2e-44 183.0 195 62.6
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.1e-43 180.6 198 59.6
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.4e-43 180.3 199 58.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.9e-43 179.9 193 58.5
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.9e-43 179.9 92 95.7
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.9e-43 179.9 195 62.6
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.2e-43 178.7 197 60.4
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 5.5e-43 178.3 193 61.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.6e-42 176.8 195 70.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.6e-42 176.8 194 61.9
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.7e-42 176.0 198 64.6
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 3.5e-42 175.6 191 61.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 7.9e-42 174.5 191 61.3
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.0e-41 174.1 197 59.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.0e-41 174.1 193 58.5
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 3.0e-41 172.6 188 68.1
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 3.0e-41 172.6 198 60.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 6.7e-41 171.4 196 64.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 6.7e-41 171.4 190 57.9
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.1e-40 170.6 191 59.7
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.5e-40 170.2 193 63.2
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.9e-40 169.9 197 54.3
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.5e-40 169.5 195 61.5
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.5e-40 169.5 199 63.8
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.6e-40 168.3 190 67.4
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 7.4e-40 167.9 192 58.9
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.3e-39 167.2 198 62.1
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.3e-39 167.2 188 59.6
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.1e-39 166.4 192 61.5
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.1e-39 166.4 199 60.8
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.7e-39 165.6 197 64.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 4.8e-39 165.2 200 64.5
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 6.2e-39 164.9 196 59.7
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 8.1e-39 164.5 191 68.6
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.1e-38 164.1 191 66.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.1e-38 164.1 186 60.2
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.4e-38 163.7 194 64.4
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.8e-38 163.3 191 68.6
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.8e-38 163.3 191 65.4
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.8e-38 163.3 195 54.4
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.8e-38 163.3 195 54.4
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.1e-38 162.5 192 62.0
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.1e-38 162.5 193 56.5
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 3.1e-38 162.5 196 57.1
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.0e-38 162.2 195 55.4
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.0e-38 162.2 195 54.4
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.3e-38 161.8 196 67.9
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.3e-38 161.8 189 59.3
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 9.0e-38 161.0 191 68.1
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.2e-37 160.6 193 61.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-37 160.6 193 55.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 2.0e-37 159.8 190 66.3
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-37 159.8 195 53.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.6e-37 159.5 200 59.5
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.6e-37 159.5 195 55.9
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 3.4e-37 159.1 191 65.4
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.4e-37 159.1 193 54.9
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.8e-37 158.3 193 55.4
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 7.6e-37 157.9 199 60.3
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 7.6e-37 157.9 189 67.7
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.0e-36 157.5 188 61.7
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.3e-36 157.1 196 61.2
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.3e-36 157.1 184 64.7
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.3e-36 157.1 195 62.6
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-36 156.8 190 66.8
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 1.7e-36 156.8 199 64.8
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.7e-36 156.8 192 60.9
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.7e-36 156.8 192 58.3
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.8e-36 155.6 194 53.6
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.8e-36 155.6 195 62.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.9e-36 155.2 197 61.9
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 4.9e-36 155.2 199 56.8
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 8.4e-36 154.5 200 52.0
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.4e-35 153.7 196 63.8
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.5e-35 152.9 189 66.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.5e-35 152.9 189 66.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 2.5e-35 152.9 191 54.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 3.2e-35 152.5 183 59.6
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 7.1e-35 151.4 194 57.7
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 7.1e-35 151.4 194 57.7
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 7.1e-35 151.4 194 57.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.2e-34 150.6 199 59.8
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.2e-34 150.6 186 68.3
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.6e-34 150.2 195 63.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-34 150.2 202 55.4
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 2.1e-34 149.8 194 57.7
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 2.1e-34 149.8 194 57.7
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.7e-34 149.4 195 54.4
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.3e-33 146.4 192 58.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 8.7e-33 144.4 179 54.7
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.9e-32 143.3 195 62.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.8e-31 138.7 196 61.7
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.2e-29 134.0 204 49.5
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 2.5e-27 126.3 193 46.1
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 5.5e-27 125.2 180 44.4
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 9.3e-27 124.4 116 61.2
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.2e-26 124.0 180 56.7
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.6e-26 122.1 158 69.6
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 4.6e-26 122.1 192 42.2
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.1e-25 118.6 135 58.5
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-24 117.1 111 58.6
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-24 115.9 111 58.6
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-24 115.9 118 60.2
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 9.7e-24 114.4 202 56.4
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 9.7e-24 114.4 111 58.6
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 9.7e-24 114.4 116 56.9
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.8e-23 112.8 135 57.0
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.8e-22 110.2 117 53.8
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 3.1e-22 109.4 116 55.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.6e-21 106.3 192 45.8
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 2.6e-21 106.3 193 37.3
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 5.9e-21 105.1 112 51.8
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.3e-20 104.0 139 54.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.7e-20 103.6 115 53.0
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 7.2e-19 98.2 116 54.3
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.7e-18 96.3 183 39.9
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.5e-13 80.5 179 49.7
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 6.5e-12 75.1 107 46.7
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 6.5e-12 75.1 109 45.0
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.7e-10 69.7 66 57.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 3.6e-10 69.3 65 58.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.7e-10 68.9 87 50.6
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 6.1e-10 68.6 115 60.9
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 6.1e-10 68.6 69 56.5
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 9.1e-06 54.7 53 58.5


User provided reference genes

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