Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2733.0 1382 100.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2614.0 1382 96.2
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2596.2 1383 93.1
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2592.4 1383 92.8
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2584.3 1383 92.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2583.9 1382 92.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2582.4 1382 92.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2580.1 1383 92.4
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2579.7 1398 92.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2577.4 1383 92.2
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2576.6 1385 92.0
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2576.6 1383 92.5
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2569.3 1382 92.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2566.6 1385 91.6
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2565.8 1385 91.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2565.4 1382 91.9
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2561.9 1382 92.0
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2561.9 1382 91.5
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2557.3 1382 92.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2556.6 1383 91.5
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2555.8 1382 91.0
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2555.4 1398 90.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2551.2 1386 91.1
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2547.7 1384 91.4
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2546.9 1383 91.0
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2546.5 1383 91.0
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2546.5 1382 91.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2545.8 1383 91.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2544.6 1382 91.1
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2543.8 1383 91.9
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1383 90.5
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2543.1 1383 90.7
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2542.3 1382 91.0
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1388 90.8
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2541.5 1388 90.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2540.8 1383 91.3
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1383 91.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1384 91.0
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2537.7 1382 91.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1383 90.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1384 90.2
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1382 90.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2536.9 1384 91.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2535.0 1385 90.8
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1383 91.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2528.4 1384 90.3
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2528.1 1382 90.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2527.7 1382 90.4
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2526.5 1382 90.4
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1382 90.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1384 90.5
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2524.2 1384 90.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1382 90.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1382 90.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2521.5 1382 90.4
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2517.7 1385 89.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1382 89.8
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2513.8 1384 89.8
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1409 88.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2509.2 1383 89.7
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2508.0 1382 90.4
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2505.3 1384 89.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1383 88.8
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2503.4 1383 88.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1386 88.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1393 88.7
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1384 88.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.1
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1384 87.9
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1384 88.0
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2470.3 1446 84.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1335 91.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2467.6 1385 87.9
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1384 88.0
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1384 87.9
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1383 88.4
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2463.0 1385 87.4
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2443.7 1355 88.9
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2436.4 1384 87.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1384 87.1
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1384 87.1
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2426.4 1384 87.0
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2425.2 1383 87.1
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2421.4 1384 86.8
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2419.8 1384 86.7
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2416.7 1384 86.6
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1384 86.3
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1384 86.3
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2400.9 1384 86.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2400.9 1384 86.1
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2399.4 1384 86.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2398.2 1258 95.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2393.6 1382 86.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2389.4 1385 85.7
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2382.1 1383 85.8
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2375.5 1384 85.7
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2347.0 1408 83.7
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2337.0 1354 84.4
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2322.7 1258 91.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2315.8 1349 83.8
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2254.6 1261 88.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2241.1 1347 84.0
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2202.2 1342 79.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2198.3 1333 80.0
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2197.9 1340 79.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2175.6 1343 78.9
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2175.6 1343 78.9
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2171.0 1344 77.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2015.7 1120 89.2
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2001.9 1380 75.6
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1992.2 1108 89.1
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1954.9 1400 74.4
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1893.6 1332 69.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1870.9 1359 68.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1726.1 1382 66.6
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1704.5 913 91.6
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1654.4 898 90.9
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1534.6 809 93.6
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1528.1 808 93.6
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1157.9 690 84.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1142.1 675 84.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1082.4 669 82.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.8e-300 1036.6 571 87.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 4.1e-265 919.1 1202 44.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.2e-264 917.5 587 79.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.4e-244 850.9 470 89.1
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.0e-244 849.4 470 88.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.1e-238 831.2 471 86.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.4e-218 762.3 471 81.5
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 9.3e-209 731.9 398 89.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.2e-177 625.9 1414 32.0
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 3.6e-160 570.5 1472 29.7
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.3e-113 414.1 1288 28.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.9e-89 335.5 175 93.7
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.4e-66 259.6 147 86.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 2.7e-59 235.3 123 91.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 3.1e-47 195.3 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 9.8e-41 173.7 197 52.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.4e-31 142.5 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.9e-28 132.9 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.7e-27 128.3 91 72.5
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.9e-20 106.3 61 85.2


User provided reference genes

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