Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 1.7e-128 462.6 222 100.0
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 5.8e-113 411.0 218 92.2
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 1.1e-108 396.7 222 83.8
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 6.9e-98 360.9 224 74.1
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 8.5e-96 354.0 218 76.6
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 1.4e-95 353.2 209 75.6
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 1.4e-95 353.2 212 76.9
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 5.5e-95 351.3 226 74.8
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 5.5e-95 351.3 212 75.9
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 2.1e-94 349.4 221 73.8
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 4.6e-94 348.2 218 74.8
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 7.9e-94 347.4 212 73.6
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 1.0e-93 347.1 217 75.1
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 1.8e-93 346.3 219 73.5
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 6.7e-93 344.4 211 74.4
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 8.8e-93 344.0 224 71.9
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.5e-92 343.2 218 73.4
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.5e-92 342.4 224 72.3
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 7.4e-92 340.9 224 72.3
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 7.4e-92 340.9 224 72.3
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 7.4e-92 340.9 225 70.7
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 7.4e-92 340.9 213 70.9
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 2.8e-91 339.0 226 72.1
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 6.3e-91 337.8 220 71.8
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.8e-90 336.3 224 70.1
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 6.9e-90 334.3 221 71.0
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 1.2e-89 333.6 220 68.2
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 1.5e-89 333.2 219 69.9
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 2.0e-89 332.8 221 67.4
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.6e-89 332.4 223 70.0
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 3.4e-89 332.0 231 68.8
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.0e-88 330.5 219 69.4
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 1.0e-88 330.5 213 71.8
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 1.7e-88 329.7 221 67.9
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.7e-88 329.7 211 69.2
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 2.2e-88 329.3 218 71.1
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 5.0e-88 328.2 221 67.0
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 6.5e-88 327.8 219 70.8
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 6.5e-88 327.8 210 71.0
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 8.5e-88 327.4 229 65.9
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.1e-87 327.0 227 69.2
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.9e-87 326.2 212 70.8
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 2.5e-87 325.9 226 69.9
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 2.5e-87 325.9 220 64.5
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 7.2e-87 324.3 222 63.1
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 7.2e-87 324.3 222 63.1
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 7.2e-87 324.3 211 67.8
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 7.2e-87 324.3 211 67.8
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 9.4e-87 323.9 222 63.1
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 9.4e-87 323.9 217 66.8
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 1.2e-86 323.6 213 71.8
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 1.2e-86 323.6 221 71.0
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 2.7e-86 322.4 213 70.4
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 7.9e-86 320.9 212 71.2
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 1.0e-85 320.5 222 63.1
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 1.4e-85 320.1 219 66.2
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.4e-85 320.1 211 69.7
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.4e-85 320.1 211 69.7
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 3.0e-85 318.9 222 61.7
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 3.0e-85 318.9 213 70.0
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 5.1e-85 318.2 209 69.4
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 5.1e-85 318.2 213 68.5
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 2.0e-84 316.2 204 69.6
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 2.0e-84 316.2 213 69.0
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 3.3e-84 315.5 222 62.6
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.3e-83 313.5 207 69.6
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 1.7e-83 313.2 212 71.7
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.7e-83 313.2 225 65.3
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 3.1e-82 308.9 230 59.1
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 3.1e-82 308.9 230 59.1
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 9.1e-82 307.4 224 59.8
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 2.2e-80 302.8 236 56.8
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 3.2e-79 298.9 219 66.7
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 2.7e-78 295.8 212 62.7
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 1.0e-77 293.9 184 69.6
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 4.0e-77 292.0 216 62.0
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 4.0e-77 292.0 209 63.6
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 1.3e-75 287.0 219 62.6
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.6e-73 280.0 222 62.2
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 1.3e-72 276.9 194 64.4
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 3.8e-72 275.4 201 63.2
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 3.2e-71 272.3 239 57.3
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.2e-70 270.4 197 67.5
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 2.1e-70 269.6 221 58.8
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 2.7e-70 269.2 161 75.8
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 5.2e-69 265.0 206 63.1
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 4.4e-68 261.9 174 70.1
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 4.8e-67 258.5 213 58.7
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 1.1e-66 257.3 180 65.6
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 3.5e-65 252.3 240 55.8
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 1.7e-64 250.0 174 63.2
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 6.1e-62 241.5 188 64.9
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 1.4e-61 240.4 212 56.6
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 5.7e-60 235.0 202 54.5
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 5.7e-60 235.0 176 60.2
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.2e-57 227.3 161 67.1
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.2e-51 206.5 130 76.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 1.8e-50 203.4 213 46.9
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 8.6e-48 194.5 189 49.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.8e-45 186.8 108 75.9
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 6.0e-41 171.8 198 46.0
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 5.0e-40 168.7 210 43.8
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.7e-35 153.7 161 51.6
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 8.9e-29 131.3 97 63.9
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.9e-27 125.6 115 59.1
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.6e-25 120.6 77 62.3
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 5.2e-21 105.5 97 47.4
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 1.3e-16 90.9 91 46.2
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 8.4e-11 71.6 87 40.2
Rhsim03G0024500 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.1e-10 71.2 49 69.4
MELO3C032006.2 Cucumis melo HOM05D001831 ORTHO05D166811 1.3e-06 57.8 30 83.3


User provided reference genes

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