Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.8e-269 932.2 520 100.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 6.1e-254 880.6 528 94.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 6.4e-187 657.9 543 71.3
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.4e-181 639.4 549 68.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 7.9e-161 571.2 523 65.6
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.1e-146 524.2 536 56.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.5e-146 523.1 538 56.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-142 510.4 513 57.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.2e-140 504.2 524 56.9
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.5e-140 502.7 528 61.4
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.9e-139 499.6 538 54.6
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.5e-139 498.4 536 59.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.2e-138 495.0 534 56.0
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 9.4e-138 494.6 452 60.2
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.8e-136 490.3 551 61.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.7e-135 485.3 529 55.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-134 483.8 523 54.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.7e-134 482.6 529 55.4
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.2e-134 481.5 535 54.8
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.6e-132 477.2 535 54.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 4.5e-132 475.7 533 54.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.0e-131 474.6 539 54.5
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.9e-131 473.0 550 52.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.1e-130 471.1 529 57.5
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.5e-130 469.9 452 59.7
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.2e-130 469.5 528 54.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.2e-130 469.2 464 59.7
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.2e-129 467.6 551 51.9
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 4.7e-129 465.7 569 54.5
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 4.7e-129 465.7 533 52.7
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.0e-128 464.5 536 59.7
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.4e-128 464.2 535 51.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.8e-125 453.8 426 60.8
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.2e-123 446.8 530 53.8
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.9e-123 446.4 532 56.8
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.0e-123 445.7 544 54.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 6.5e-123 445.3 531 54.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-120 437.6 359 65.2
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.8e-120 437.2 537 53.4
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.8e-120 435.3 536 50.4
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 6.8e-120 435.3 457 57.8
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.8e-119 431.4 507 57.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 8.3e-118 428.3 521 50.5
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 4.1e-117 426.0 509 58.3
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.0e-117 425.2 520 48.1
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-116 424.5 509 58.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.0e-116 423.7 520 47.5
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.5e-116 422.5 373 61.9
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.7e-116 421.8 511 48.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.0e-115 419.1 529 49.5
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 8.6e-115 418.3 528 47.7
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 7.3e-114 415.2 521 50.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.2e-113 414.5 354 64.1
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.1e-113 412.1 526 48.9
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.4e-112 411.0 526 49.6
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.3e-112 410.2 392 58.2
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 4.0e-112 409.5 521 49.9
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 5.7e-111 405.6 455 54.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.9e-110 402.5 533 51.2
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.0e-108 397.1 455 50.8
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 6.6e-107 392.1 520 47.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.8e-105 386.7 544 47.1
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 4.7e-105 386.0 538 45.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.0e-104 384.8 484 52.1
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.0e-104 384.8 360 58.3
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.6e-103 380.2 466 51.1
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.4e-103 379.8 462 50.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 5.8e-103 379.0 462 50.6
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 5.8e-103 379.0 507 48.7
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 7.5e-103 378.6 516 46.3
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 9.8e-103 378.3 547 45.5
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.7e-102 377.5 517 45.3
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.7e-102 376.3 535 46.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.4e-101 374.4 452 52.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-101 374.4 515 46.2
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.4e-101 373.6 471 49.3
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.2e-100 371.3 525 47.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.3e-99 367.9 510 48.4
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.3e-99 367.1 533 43.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 8.6e-99 365.2 451 47.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 4.3e-98 362.8 522 45.6
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 5.6e-98 362.5 476 47.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.0e-95 354.0 472 47.9
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 5.8e-95 352.4 436 51.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 7.5e-95 352.1 456 48.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 7.5e-95 352.1 456 48.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 7.5e-95 352.1 456 48.0
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 7.5e-95 352.1 448 47.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.2e-94 350.5 348 55.5
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.4e-94 349.0 364 52.2
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.4e-93 347.8 369 54.5
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.4e-93 347.1 361 53.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 4.1e-93 346.3 369 54.2
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-92 344.7 432 49.5
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.1e-92 344.0 487 49.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 4.6e-92 342.8 468 47.4
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 4.6e-92 342.8 468 47.4
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 4.6e-92 342.8 468 47.4
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 3.9e-91 339.7 455 48.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 5.1e-91 339.3 532 43.2
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 6.6e-91 339.0 511 44.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.1e-90 338.2 453 45.9
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 7.3e-90 335.5 429 48.5
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 9.5e-90 335.1 430 47.9
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-88 331.3 471 45.4
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.8e-88 330.9 461 46.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.8e-88 330.9 536 42.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 5.2e-88 329.3 366 51.6
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 8.9e-88 328.6 458 46.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 7.6e-87 325.5 522 43.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.2e-85 320.1 528 42.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.2e-85 320.1 528 42.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.6e-84 317.8 498 42.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.0e-84 315.8 362 50.0
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 6.0e-84 315.8 314 56.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.9e-83 313.2 528 42.6
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.9e-82 310.8 509 40.7
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.5e-82 310.5 392 47.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.5e-82 310.5 346 52.3
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.4e-80 304.7 362 50.3
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 8.9e-80 302.0 453 43.5
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 8.9e-80 302.0 367 49.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 9.9e-79 298.5 535 37.4
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.4e-78 295.8 424 46.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.9e-77 294.3 406 45.1
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.4e-77 292.7 399 47.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.0e-76 289.3 459 39.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.7e-75 287.7 327 51.7
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.9e-75 286.6 382 45.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 4.0e-72 276.6 340 50.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.2e-69 266.9 312 51.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.9e-68 262.3 344 47.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.1e-67 259.6 223 63.2
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-66 258.5 452 39.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.7e-62 244.6 387 40.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 9.3e-61 238.8 284 51.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.6e-60 238.0 378 39.7
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 7.9e-60 235.7 294 46.6
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.9e-56 222.6 534 33.7
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.9e-56 222.6 534 33.7
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.3e-51 208.4 492 33.5
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.9e-40 169.5 183 52.5
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.6e-39 167.5 182 52.2
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.5e-39 166.8 253 38.3
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.0e-38 163.3 506 29.4
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.5e-37 159.8 556 28.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.2e-37 159.5 500 28.4
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-34 150.2 470 28.3
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-34 150.2 558 26.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 6.9e-32 142.9 123 57.7
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 9.1e-32 142.5 311 32.5
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.2e-31 142.1 162 51.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 7.7e-31 139.4 469 25.6
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-30 138.3 511 26.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.9e-28 129.4 329 29.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.6e-23 114.4 222 34.2
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 8.5e-22 109.4 142 46.5
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 6.1e-20 103.2 93 54.8
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 7.5e-18 96.3 82 58.5
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.8e-17 94.4 123 44.7
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-11 74.3 53 71.7
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.4e-08 63.5 56 48.2


User provided reference genes

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