Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.1e-236 822.0 423 100.0
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.0e-231 805.4 423 97.6
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.9e-213 745.7 423 90.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 4.7e-204 714.5 392 90.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.1e-195 686.8 427 82.7
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.1e-195 686.8 427 82.9
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 2.3e-195 685.6 427 82.7
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.5e-194 682.9 428 81.8
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 2.6e-194 682.2 430 81.9
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.4e-194 681.4 426 81.9
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 9.8e-194 680.2 426 81.5
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 6.4e-193 677.6 430 80.5
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.4e-193 677.6 385 88.3
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 8.3e-193 677.2 426 80.5
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 8.3e-193 677.2 428 82.5
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.1e-192 676.8 427 80.8
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.2e-192 675.2 431 80.0
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.6e-191 672.9 428 81.8
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 7.8e-191 670.6 426 80.3
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.7e-190 669.5 426 80.3
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.7e-190 669.5 434 79.0
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 5.0e-190 667.9 432 79.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 6.6e-190 667.5 427 80.1
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.5e-189 666.4 430 79.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.5e-189 665.6 385 84.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.3e-189 665.2 430 80.7
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 7.3e-189 664.1 427 79.4
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.6e-188 662.9 432 79.6
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.6e-188 661.8 423 79.4
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 8.1e-188 660.6 423 79.2
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.1e-187 660.2 423 79.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.8e-187 659.4 423 79.2
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 5.2e-187 657.9 423 79.2
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.2e-187 657.9 425 79.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.9e-187 657.1 424 79.5
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.4e-186 655.2 397 82.1
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.4e-186 655.2 423 79.0
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.8e-186 654.4 425 78.4
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 9.9e-186 653.7 424 79.0
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 9.9e-186 653.7 422 79.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 6.4e-185 651.0 428 78.0
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 8.3e-185 650.6 425 79.1
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.9e-184 649.4 423 78.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.4e-184 649.0 423 78.3
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 5.4e-184 647.9 423 77.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.1e-184 647.5 425 78.8
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-183 646.7 423 78.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-183 646.7 423 78.3
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.1e-183 646.0 428 77.3
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 6.0e-183 644.4 427 78.2
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 7.8e-183 644.0 429 76.9
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.3e-182 643.3 421 76.7
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 8.6e-182 640.6 445 75.1
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.5e-181 639.8 398 80.2
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.3e-181 638.6 426 77.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.6e-181 637.9 425 76.5
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 9.5e-181 637.1 424 76.9
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.2e-180 636.7 446 74.9
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 2.1e-180 636.0 423 77.1
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.1e-180 636.0 424 76.9
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.8e-180 635.6 425 75.8
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.6e-180 635.2 423 76.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.7e-180 634.8 429 77.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.4e-179 632.5 398 79.6
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.1e-179 632.1 431 76.6
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 8.9e-179 630.6 394 79.2
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 3.8e-177 625.2 424 75.9
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 6.4e-177 624.4 424 75.9
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 8.4e-177 624.0 424 76.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.4e-176 623.2 394 80.2
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.9e-176 622.9 431 75.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.4e-176 622.5 441 72.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 4.1e-176 621.7 423 75.2
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 4.1e-176 621.7 424 75.5
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-176 621.3 424 75.7
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 5.4e-176 621.3 403 79.4
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 9.2e-176 620.5 424 75.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 9.2e-176 620.5 424 75.9
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.2e-175 620.2 433 73.2
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.6e-175 619.8 424 75.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.6e-175 619.8 431 73.5
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.1e-175 619.4 405 78.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.1e-175 619.4 419 75.7
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.1e-175 619.4 433 74.4
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.1e-175 619.4 408 76.2
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.7e-175 619.0 434 73.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.7e-175 619.0 431 73.5
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.5e-175 618.6 423 75.2
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.8e-175 617.5 404 78.5
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 7.8e-175 617.5 427 73.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.7e-174 616.3 432 74.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 3.9e-174 615.1 423 75.2
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 6.6e-174 614.4 424 74.5
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 6.6e-174 614.4 409 76.8
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 8.7e-174 614.0 429 75.3
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.1e-173 613.6 427 74.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.5e-173 612.5 426 76.3
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.5e-173 612.5 424 74.8
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.3e-173 612.1 423 74.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.3e-173 612.1 423 74.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.3e-173 612.1 423 74.5
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.6e-173 611.3 436 72.9
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 5.6e-173 611.3 433 74.4
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 9.6e-173 610.5 423 74.2
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.2e-172 610.1 385 78.7
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.6e-172 609.8 429 74.8
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 2.1e-172 609.4 407 77.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.6e-172 608.6 431 74.0
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.2e-172 607.8 424 73.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 8.1e-172 607.4 423 73.8
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.4e-171 605.9 429 72.3
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 9.0e-171 604.0 406 76.4
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 9.9e-170 600.5 424 73.3
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.4e-168 596.7 426 73.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.4e-168 595.9 382 78.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 9.3e-168 594.0 361 81.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.0e-166 590.5 423 73.3
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 8.7e-166 587.4 473 66.6
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.5e-165 586.6 407 73.2
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 5.6e-165 584.7 413 75.3
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 9.6e-165 583.9 427 70.3
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.8e-163 579.7 423 72.1
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 4.5e-162 575.1 335 84.2
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 9.9e-162 573.9 455 69.7
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.2e-161 572.8 394 73.9
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.9e-160 569.7 431 70.5
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 6.0e-159 564.7 423 70.9
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.0e-158 562.4 423 67.6
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.7e-156 555.4 379 75.2
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.3e-155 551.6 438 67.6
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.0e-154 549.7 373 71.6
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 5.8e-154 548.1 423 66.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.4e-152 543.5 375 71.5
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.1e-151 539.7 322 82.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.1e-151 539.7 438 68.3
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.8e-148 528.5 320 81.6
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 8.2e-148 527.7 414 70.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.0e-142 510.8 351 74.6
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.1e-141 507.3 417 66.7
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.9e-141 506.5 398 65.6
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.7e-141 505.0 421 61.8
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 8.2e-140 501.1 374 71.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.3e-134 483.0 429 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.3e-133 478.8 412 61.2
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-131 474.2 427 63.5
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.7e-130 468.0 353 70.8
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 9.4e-128 461.1 394 60.9
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.1e-127 459.9 369 65.9
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.8e-116 422.9 241 85.1
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.5e-113 411.8 335 64.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.7e-106 388.3 271 70.8
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 8.5e-105 384.8 211 91.0
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.6e-103 380.6 231 82.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.0e-95 351.7 409 49.4
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 2.3e-94 350.1 390 49.5
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 7.0e-91 338.6 391 49.9
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.2e-87 327.8 277 58.8
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 7.8e-82 308.5 351 55.6
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.2e-77 294.7 196 73.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.9e-68 262.7 151 85.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.1e-67 261.5 222 63.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 3.0e-65 253.4 308 45.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.1e-62 243.4 302 46.4
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 9.2e-59 231.9 214 57.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.7e-58 230.3 317 42.0
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.3e-54 216.1 426 38.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.9e-52 210.3 120 81.7
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.1e-51 205.7 182 61.0
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 3.0e-33 147.1 135 63.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.3e-28 131.7 75 85.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 6.1e-26 122.9 69 82.6
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 3.3e-24 117.1 90 64.4
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.7e-20 104.8 75 66.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 7.9e-18 95.9 120 49.2
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.5e-16 91.7 103 48.5
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.5e-16 90.9 68 66.2
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.3e-16 90.5 61 75.4
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 3.1e-14 84.0 55 67.3
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.5e-13 81.6 60 63.3
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.5e-11 74.3 123 40.7
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 8.8e-09 65.9 143 34.3


User provided reference genes

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