Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 8.5e-146 520.4 276 100.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.8e-143 510.4 276 97.5
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 6.8e-127 457.6 275 84.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.2e-126 456.8 276 85.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.5e-126 456.4 276 83.3
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-126 455.3 276 84.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-126 455.3 276 84.4
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 7.5e-126 454.1 275 83.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-125 452.6 276 84.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.3e-125 450.7 276 84.1
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.8e-124 449.5 276 83.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 9.1e-124 447.2 276 83.3
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 3.5e-123 445.3 273 82.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.8e-122 441.8 287 80.8
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 5.5e-121 438.0 273 80.2
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 5.5e-121 438.0 276 80.8
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 6.1e-120 434.5 276 79.7
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.4e-119 433.3 274 80.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.8e-119 433.0 274 79.2
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.0e-119 432.2 277 80.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 6.8e-119 431.0 272 82.0
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.0e-118 429.5 273 78.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 4.4e-118 428.3 274 79.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.7e-118 427.9 277 79.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 7.5e-118 427.6 276 80.1
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 9.8e-118 427.2 272 81.6
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.3e-117 426.8 277 80.1
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.3e-117 426.8 268 79.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.3e-117 426.8 274 78.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.7e-117 426.4 274 79.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-117 426.4 274 78.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.7e-117 426.4 273 79.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 78.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.7e-117 425.2 272 78.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 4.9e-117 424.9 277 80.1
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.9e-117 424.9 272 79.4
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 6.3e-117 424.5 274 79.2
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 76.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.8e-116 422.9 274 79.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.4e-116 422.5 276 77.9
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.1e-116 421.8 274 79.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 7.0e-116 421.0 273 78.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-115 420.2 277 78.0
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.6e-115 419.9 274 77.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.6e-115 419.9 274 77.0
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.0e-115 419.5 277 78.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.7e-115 419.1 277 78.3
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 78.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.5e-115 418.7 271 77.1
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 7.8e-115 417.5 272 77.9
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 7.8e-115 417.5 274 77.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 7.8e-115 417.5 274 77.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 7.8e-115 417.5 272 77.9
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.8e-115 417.5 274 78.1
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.0e-114 417.2 276 76.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.3e-114 416.8 274 76.6
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.7e-114 416.4 275 76.7
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.8e-114 415.2 271 79.3
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 8.6e-114 414.1 277 77.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.5e-113 413.3 272 78.3
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.5e-113 412.5 277 77.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.3e-113 412.1 271 77.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 5.6e-113 411.4 304 71.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.6e-113 411.4 272 78.3
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.2e-112 410.2 272 77.6
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.6e-112 409.8 272 75.7
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.1e-112 409.5 277 75.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.8e-112 409.1 277 74.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-112 409.1 270 77.0
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.8e-112 409.1 271 76.0
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.6e-112 408.7 277 76.2
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 3.6e-112 408.7 292 72.9
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 8.0e-112 407.5 270 76.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.3e-111 406.0 280 75.4
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.3e-111 406.0 273 75.8
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 4.0e-111 405.2 277 75.5
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 5.2e-111 404.8 277 76.2
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 6.8e-111 404.4 285 73.3
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 8.9e-111 404.1 277 75.5
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 8.9e-111 404.1 277 75.5
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 8.9e-111 404.1 274 75.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-110 402.1 277 75.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 74.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 5.8e-110 401.4 279 74.2
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 7.5e-110 401.0 277 74.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 9.8e-110 400.6 271 74.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 74.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-109 399.4 277 74.0
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.7e-109 398.7 277 74.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 6.4e-109 397.9 271 74.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.8e-108 396.4 276 75.0
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.1e-108 395.2 276 71.7
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 73.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 73.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 73.3
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.9e-106 388.7 290 69.0
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 3.9e-106 388.7 277 72.2
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 5.0e-106 388.3 272 72.1
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.9e-105 386.3 335 63.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.6e-104 382.1 281 71.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 6.2e-104 381.3 319 65.2
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 6.2e-104 381.3 265 74.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.3e-103 379.4 365 58.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.9e-103 377.5 324 64.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.4e-102 375.2 266 72.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.5e-102 374.4 273 71.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.6e-99 365.2 271 68.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.0e-99 364.8 271 68.6
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.9e-98 362.1 256 71.9
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.1e-97 360.5 279 67.4
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.9e-97 359.8 265 68.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-95 354.0 271 69.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.4e-95 353.6 265 68.7
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.0e-94 349.7 272 66.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.0e-90 335.9 273 60.1
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 9.5e-89 330.9 274 60.6
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-88 327.8 484 44.2
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.1e-87 327.4 484 44.2
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.0e-86 323.2 211 79.6
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 6.4e-85 318.2 270 61.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-81 306.2 255 63.9
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.5e-81 306.2 266 60.5
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.7e-80 302.0 263 58.6
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-80 301.2 273 57.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 6.9e-79 298.1 263 58.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-77 293.5 255 62.7
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.8e-77 292.4 282 57.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-77 292.0 258 62.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 6.4e-77 291.6 282 57.8
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-76 290.4 259 62.9
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 2.1e-75 286.6 276 55.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.0e-74 284.3 299 58.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-74 282.7 282 56.7
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-73 280.4 282 56.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 4.3e-73 278.9 282 56.7
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 7.3e-73 278.1 262 54.2
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.0e-71 272.3 259 61.8
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 4.5e-70 268.9 275 50.5
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-68 263.5 164 80.5
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-66 256.5 226 62.4
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 3.7e-64 249.2 256 56.2
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 9.0e-63 244.6 281 52.3
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 3.8e-61 239.2 266 51.5
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 7.9e-59 231.5 147 79.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.3e-57 225.7 270 50.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-54 215.7 251 49.8
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 7.1e-52 208.4 131 80.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-49 200.3 267 47.2
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-45 188.0 131 74.8
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 5.0e-45 185.7 136 72.8
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-44 183.0 164 63.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-42 176.4 148 63.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 5.1e-42 175.6 413 34.1
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 8.8e-42 174.9 138 63.8
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 6.9e-39 165.2 228 45.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.5e-37 158.3 130 63.8
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.2e-36 156.0 96 81.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.2e-35 154.5 120 70.0
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 3.5e-30 136.3 140 57.9
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.9e-28 130.6 117 59.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-26 124.0 302 29.5
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 6.7e-26 122.1 260 30.4
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.2e-24 117.1 263 29.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.0e-21 108.2 72 79.2
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-20 104.8 67 74.6
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-20 102.8 111 52.3
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.6e-19 99.8 153 44.4
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 6.7e-18 95.5 53 86.8
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 82 57.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.8e-16 90.1 69 63.8
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.3e-16 88.6 68 67.6
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 8.3e-16 88.6 68 67.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-15 87.0 59 74.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-15 86.7 52 82.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 86.3 52 80.8
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-15 86.3 52 80.8
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.1e-15 86.3 71 64.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.1e-15 85.1 52 80.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.1e-15 85.1 68 64.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-14 84.0 52 80.8
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.0e-14 84.0 68 64.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-13 80.9 50 78.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 4.7e-11 72.8 62 58.1
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 4.4e-09 66.2 55 58.2
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.7e-06 57.0 48 62.5


User provided reference genes

Program Settings