Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 1.1e-119 433.3 218 100.0
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 5.4e-95 351.3 188 95.7
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 1.1e-55 220.7 184 67.4
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 1.8e-45 186.8 193 57.5
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 3.2e-39 166.0 191 52.4
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 1.4e-34 150.6 195 48.2
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 1.2e-33 147.5 204 45.6
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 1.2e-33 147.5 193 49.2
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 3.4e-33 146.0 196 45.9
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 7.7e-33 144.8 214 47.7
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 1.0e-32 144.4 211 44.1
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 1.7e-32 143.7 202 45.5
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 2.2e-32 143.3 193 48.7
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 1.1e-31 141.0 194 49.0
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 1.1e-31 141.0 194 49.0
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 3.2e-31 139.4 193 52.3
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 4.2e-31 139.0 187 47.1
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 1.8e-29 133.7 185 44.9
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 2.0e-28 130.2 193 47.2
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 2.6e-28 129.8 190 46.3
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 1.1e-26 124.4 191 46.6
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.1e-26 124.4 204 44.6
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 3.1e-26 122.9 203 43.3
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 4.1e-26 122.5 190 42.6
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 5.3e-26 122.1 203 41.4
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 5.3e-26 122.1 203 44.8
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 5.3e-26 122.1 189 43.4
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.7e-24 117.1 202 44.1
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 2.9e-24 116.3 225 41.3
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 1.1e-23 114.4 225 40.9
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 1.4e-21 107.5 212 41.0
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 3.9e-21 105.9 196 39.3
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 3.9e-21 105.9 208 40.9
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 1.1e-20 104.4 217 40.1
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 2.0e-20 103.6 211 38.4
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 2.6e-20 103.2 220 36.4
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 3.3e-20 102.8 193 42.0
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 3.3e-20 102.8 193 42.0
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 5.7e-20 102.1 199 39.2
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 9.7e-20 101.3 204 40.2
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 6.3e-19 98.6 201 38.3
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 8.2e-19 98.2 168 41.7
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 8.2e-19 98.2 203 36.5
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 8.2e-19 98.2 204 37.3
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 8.2e-19 98.2 203 36.5
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 1.4e-18 97.4 183 38.3
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 3.1e-18 96.3 210 36.7
Prupe.7G097300 Prunus persica HOM05D007532 ORTHO05D009483 5.3e-18 95.5 184 41.8
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 1.2e-17 94.4 213 36.6
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 1.6e-17 94.0 203 36.0
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 1.6e-17 94.0 203 36.0
MD14G1037100 Malus domestica HOM05D007532 ORTHO05D009483 2.0e-17 93.6 184 42.4
Aqoxy1G00693 Aquilegia oxysepala HOM05D007532 ORTHO05D009483 5.9e-17 92.0 178 38.8
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 7.7e-17 91.7 195 40.5
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 1.7e-16 90.5 141 42.6
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 1.7e-16 90.5 183 39.3
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 2.2e-16 90.1 219 34.7
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 3.8e-16 89.4 202 36.6
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 3.8e-16 89.4 204 38.2
Lsat_1_v5_gn_1_57140 Lactuca sativa HOM05D007532 ORTHO05D009483 3.8e-16 89.4 195 34.4
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 3.8e-16 89.4 202 37.1
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 6.5e-16 88.6 200 36.0
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 6.5e-16 88.6 192 38.0
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 6.5e-16 88.6 192 38.0
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 6.5e-16 88.6 189 38.6
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 8.5e-16 88.2 193 39.9
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 1.1e-15 87.8 218 34.9
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 1.5e-15 87.4 200 39.0
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 3.2e-15 86.3 203 36.0
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 3.2e-15 86.3 198 36.4
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 3.2e-15 86.3 217 33.2
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 3.2e-15 86.3 207 35.7
Sc20g0006700 Simmondsia chinensis HOM05D007532 ORTHO05D009483 4.2e-15 85.9 170 37.6
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 1.2e-14 84.3 189 38.6
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 2.1e-14 83.6 215 37.7
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 2.1e-14 83.6 188 38.8
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 3.6e-14 82.8 193 35.8
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 4.7e-14 82.4 221 32.6
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 6.1e-14 82.0 190 38.9
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 4.0e-13 79.3 199 36.2
Duzib128G1760 Durio zibethinus HOM05D002150 ORTHO05D002191 4.4e-12 75.9 201 33.8
HanXRQChr14g0458181 Helianthus annuus HOM05D002150 ORTHO05D002191 7.5e-12 75.1 189 31.7
AUR62006278 Chenopodium quinoa HOM05D007532 ORTHO05D009483 9.7e-12 74.7 191 36.6
Glyma.10G079300 Glycine max HOM05D007532 ORTHO05D009483 9.7e-12 74.7 186 34.9
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 1.3e-11 74.3 217 30.4
AUR62037048 Chenopodium quinoa HOM05D007532 ORTHO05D009483 3.7e-11 72.8 191 35.1
COL.COLO4_14995 Corchorus olitorius HOM05D002150 ORTHO05D002191 3.7e-11 72.8 194 33.0
Actinidia02955 Actinidia chinensis HOM05D002150 ORTHO05D002191 4.8e-11 72.4 206 31.1
arahy.Tifrunner.gnm1.ann1.R0B094 Arachis hypogaea HOM05D007532 ORTHO05D009483 4.8e-11 72.4 183 37.7
arahy.Tifrunner.gnm1.ann1.U8RNVP Arachis hypogaea HOM05D007532 ORTHO05D009483 4.8e-11 72.4 183 37.7
ECA238G0408 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-11 72.4 179 35.2
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 8.2e-11 71.6 208 32.2
Aqoxy4G02951 Aquilegia oxysepala HOM05D002150 ORTHO05D002191 1.1e-10 71.2 210 31.9
DCAR_016921 Daucus carota HOM05D007532 ORTHO05D009483 1.1e-10 71.2 181 37.0
Thecc.10G044300 Theobroma cacao HOM05D002150 ORTHO05D002191 1.1e-10 71.2 209 31.6
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 2.4e-10 70.1 198 31.8
Glyma.02G093100 Glycine max HOM05D002150 ORTHO05D002191 2.4e-10 70.1 206 30.1
Lsat_1_v5_gn_8_15640 Lactuca sativa HOM05D002150 ORTHO05D002191 3.1e-10 69.7 185 32.4
Lalb_Chr10g0091741 Lupinus albus HOM05D002150 ORTHO05D002191 4.1e-10 69.3 192 31.8
VMungo1383G0536 Vigna mungo HOM05D002150 ORTHO05D002191 4.1e-10 69.3 204 30.4
Duzib114G0657 Durio zibethinus HOM05D002150 ORTHO05D002191 9.1e-10 68.2 199 32.7
Prupe.2G218900 Prunus persica HOM05D007532 ORTHO05D009483 9.1e-10 68.2 183 33.3
CSS0006598 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 1.6e-09 67.4 203 29.1
CSS0034701 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 1.6e-09 67.4 203 29.1
Phvul.008G012900 Phaseolus vulgaris HOM05D002150 ORTHO05D002191 1.6e-09 67.4 203 30.5
SGA_v2.0_scaffold35G14004 Striga asiatica HOM05D007532 ORTHO05D009483 1.6e-09 67.4 155 36.1
QL08p059179 Quercus lobata HOM05D002150 ORTHO05D002191 2.0e-09 67.0 209 30.6
Glyma.18G289200 Glycine max HOM05D002150 ORTHO05D002191 2.7e-09 66.6 207 31.4
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 2.7e-09 66.6 199 33.2
Dinv31446 Davidia involucrata HOM05D002150 ORTHO05D002191 3.5e-09 66.2 205 30.2
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 5.9e-09 65.5 199 31.2
Duzib106G0156 Durio zibethinus HOM05D002150 ORTHO05D002191 5.9e-09 65.5 193 31.1
TWI15G1205 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 5.9e-09 65.5 200 29.0
TAR369G0649 Trochodendron aralioides HOM05D002150 ORTHO05D002191 5.9e-09 65.5 204 30.4
Sp3g09870 Schrenkiella parvula HOM05D014261 ORTHO05D016579 1.0e-08 64.7 146 37.0
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 1.3e-08 64.3 208 29.8
Cc02_g08010 Coffea canephora HOM05D002150 ORTHO05D002191 2.2e-08 63.5 209 29.7
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla HOM05D002150 ORTHO05D002191 2.2e-08 63.5 208 30.3
Peaxi162Scf00015g00142 Petunia axillaris HOM05D002150 ORTHO05D002191 2.2e-08 63.5 202 31.7
MELO3C021655.2 Cucumis melo HOM05D002150 ORTHO05D002191 2.9e-08 63.2 213 30.5
Medtr7g024480 Medicago truncatula HOM05D002150 ORTHO05D002191 2.9e-08 63.2 205 26.8
CsaV3_5G026480 Cucumis sativus L. HOM05D002150 ORTHO05D002191 3.8e-08 62.8 213 30.5
PGR142G1450 Punica granatum HOM05D002150 ORTHO05D002191 5.0e-08 62.4 209 32.5
ClCG09G019970 Citrullus lanatus HOM05D002150 ORTHO05D002191 6.5e-08 62.0 213 30.5
FAN10G3914 Fragaria x ananassa HOM05D002150 ORTHO05D002191 8.5e-08 61.6 210 29.5
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 1.1e-07 61.2 202 31.2
Sc09g0007040 Simmondsia chinensis HOM05D002150 ORTHO05D002191 1.1e-07 61.2 203 29.1
ATR0772G158 Amborella trichopoda HOM05D002150 ORTHO05D002191 1.5e-07 60.8 239 28.9
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 1.5e-07 60.8 208 26.0
ECA238G3924 Erigeron canadensis HOM05D002150 ORTHO05D002191 1.5e-07 60.8 183 31.1
CAN.G1013.11 Capsicum annuum HOM05D002150 ORTHO05D002191 3.2e-07 59.7 201 30.8
Cfa001494 Carpinus fangiana HOM05D002150 ORTHO05D002191 3.2e-07 59.7 208 29.8
Nn2g14270 Nelumbo nucifera HOM05D007532 ORTHO05D009483 3.2e-07 59.7 100 40.0
Sed0020416 Sechium edule HOM05D002150 ORTHO05D002191 3.2e-07 59.7 211 29.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 3.2e-07 59.7 200 30.5
FvH4_3g35750 Fragaria vesca HOM05D002150 ORTHO05D002191 4.2e-07 59.3 158 31.6
FAN01G1666 Fragaria x ananassa HOM05D002150 ORTHO05D002191 4.2e-07 59.3 215 29.3
FAN11G3229 Fragaria x ananassa HOM05D002150 ORTHO05D002191 4.2e-07 59.3 158 31.6
FAN21G2799 Fragaria x ananassa HOM05D002150 ORTHO05D002191 4.2e-07 59.3 158 31.6
FAN25G2559 Fragaria x ananassa HOM05D002150 ORTHO05D002191 4.2e-07 59.3 158 31.6
Psat3g181480 Pisum sativum HOM05D002150 ORTHO05D002191 4.2e-07 59.3 216 25.9
PGSC0003DMG400023425 Solanum tuberosum HOM05D002150 ORTHO05D002191 4.2e-07 59.3 205 30.2
EL10Ac2g03394 Beta vulgaris HOM05D002150 ORTHO05D002191 5.5e-07 58.9 207 28.5
Duzib168G0932 Durio zibethinus HOM05D002150 ORTHO05D002191 5.5e-07 58.9 206 29.1
FvH4_7g22100 Fragaria vesca HOM05D002150 ORTHO05D002191 5.5e-07 58.9 211 30.3
Lj1g0013000 Lotus japonicus HOM05D002150 ORTHO05D002191 5.5e-07 58.9 210 27.6
Potri.010G206100 Populus trichocarpa HOM05D002150 ORTHO05D002191 5.5e-07 58.9 203 29.6
FAN01G1088 Fragaria x ananassa HOM05D002150 ORTHO05D002191 7.2e-07 58.5 211 30.3
FAN06G3415 Fragaria x ananassa HOM05D002150 ORTHO05D002191 7.2e-07 58.5 211 30.3
QL01p032435 Quercus lobata HOM05D002150 ORTHO05D002191 7.2e-07 58.5 204 31.9
CiPaw.02G183100 Carya illinoinensis HOM05D002150 ORTHO05D002191 9.4e-07 58.2 206 29.1
Ciclev10032119m.g Citrus clementina HOM05D002150 ORTHO05D002191 9.4e-07 58.2 223 27.8
Sopen05g033010 Solanum pennellii HOM05D002150 ORTHO05D002191 9.4e-07 58.2 205 29.8
Haze_17047 Corylus avellana HOM05D002150 ORTHO05D002191 1.6e-06 57.4 210 29.5
RcHm_v2.0_Chr1g0366491 Rosa chinensis HOM05D002150 ORTHO05D002191 1.6e-06 57.4 216 30.1
Solyc05g054530.1 Solanum lycopersicum HOM05D002150 ORTHO05D002191 1.6e-06 57.4 206 28.6
HanXRQChr08g0220401 Helianthus annuus HOM05D002150 ORTHO05D002191 2.1e-06 57.0 195 28.2
Potri.001G238300 Populus trichocarpa HOM05D002150 ORTHO05D002191 2.1e-06 57.0 200 30.0
Potri.009G029300 Populus trichocarpa HOM05D002150 ORTHO05D002191 2.1e-06 57.0 199 30.2
ECA233G1985 Erigeron canadensis HOM05D002150 ORTHO05D002191 2.7e-06 56.6 155 29.0
FAN03G0145 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.7e-06 56.6 203 29.1
Lj1P935T28 Lonicera japonica HOM05D002150 ORTHO05D002191 2.7e-06 56.6 179 29.6
CDE08G0971 Ceratophyllum demersum HOM05D002150 ORTHO05D002191 3.6e-06 56.2 153 31.4
Lj8C85T13 Lonicera japonica HOM05D002150 ORTHO05D002191 3.6e-06 56.2 210 27.1
Prupe.6G080000 Prunus persica HOM05D002150 ORTHO05D002191 3.6e-06 56.2 211 28.4
Ah.05g174060 Amaranthus hybridus HOM05D002150 ORTHO05D002191 4.7e-06 55.8 192 27.6
Thecc.09G324000 Theobroma cacao HOM05D002150 ORTHO05D002191 4.7e-06 55.8 209 28.2
TAR623G1329 Trochodendron aralioides HOM05D002150 ORTHO05D002191 4.7e-06 55.8 193 31.6
Eucgr.G02923 Eucalyptus grandis HOM05D002150 ORTHO05D002191 6.1e-06 55.5 212 28.3
Potri.008G054400 Populus trichocarpa HOM05D002150 ORTHO05D002191 8.0e-06 55.1 204 28.9


User provided reference genes

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