Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.8e-28 127.9 63 100.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.7e-23 111.3 61 86.9
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.3e-21 104.0 61 80.3
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.8e-19 98.6 61 80.3
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.4e-19 98.2 61 73.8
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 5.9e-18 93.6 61 70.5
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 72.1
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 68.9
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 75.4
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.7e-17 92.0 59 74.6
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.2e-17 91.7 61 72.1
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.8e-17 90.9 61 70.5
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.8e-17 90.9 61 70.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.1e-16 89.4 61 68.9
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.1e-16 89.4 61 65.6
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.4e-16 89.0 61 70.5
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.9e-16 88.6 63 66.7
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 7.2e-16 86.7 60 68.3
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.6e-15 85.5 48 83.3
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.6e-15 85.5 61 62.3
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.7e-15 84.7 60 68.3
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.8e-14 82.0 61 62.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.0e-14 81.3 60 63.3
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 6.7e-14 80.1 57 66.7
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 8.7e-14 79.7 53 67.9
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 8.7e-14 79.7 57 66.7
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 8.7e-14 79.7 53 66.0
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.5e-13 79.0 61 63.9
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-13 79.0 53 64.2
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-13 79.0 53 64.2
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.5e-13 79.0 53 64.2
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.5e-13 79.0 53 64.2
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.9e-13 78.6 57 64.9
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.9e-13 78.6 57 64.9
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.9e-13 78.6 57 64.9
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.9e-13 78.6 53 67.9
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-13 78.2 53 64.2
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-13 78.2 53 64.2
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.3e-13 77.8 53 62.3
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.3e-13 77.4 53 62.3
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.3e-13 77.4 53 62.3
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 5.7e-13 77.0 53 60.4
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 5.7e-13 77.0 57 63.2
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 5.7e-13 77.0 57 63.2
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 7.4e-13 76.6 53 62.3
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 7.4e-13 76.6 58 58.6
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 9.7e-13 76.3 53 60.4
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.3e-12 75.9 58 58.6
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.3e-12 75.9 53 64.2
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-12 75.5 53 62.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.6e-12 75.5 53 64.2
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.8e-12 74.7 58 60.3
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.7e-12 74.3 53 66.0
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 8.2e-12 73.2 53 60.4
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 8.2e-12 73.2 53 60.4
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 8.2e-12 73.2 63 57.1
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.8e-11 72.0 57 57.9
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 2.4e-11 71.6 53 62.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.4e-11 71.6 53 58.5
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.4e-11 71.6 57 54.4
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.1e-11 71.2 57 54.4
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 3.1e-11 71.2 53 62.3
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.1e-11 71.2 53 60.4
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 4.1e-11 70.9 57 54.4
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.1e-11 70.9 53 56.6
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 5.3e-11 70.5 63 54.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 1.2e-10 69.3 53 54.7
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.5e-10 68.9 58 53.4
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.5e-10 68.9 53 52.8
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.5e-10 68.9 57 56.1
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.0e-10 68.6 53 52.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.0e-10 68.6 60 51.7
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.6e-10 68.2 53 58.5
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 56.6
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 52.8
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 52.8
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 52.8
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 52.8
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 4.5e-10 67.4 50 60.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 52.8
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 7.7e-10 66.6 55 56.4
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.0e-09 66.2 62 51.6
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 50.9
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.2e-09 65.1 53 52.8
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 2.9e-09 64.7 54 57.4
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 2.9e-09 64.7 53 54.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.9e-09 64.7 53 50.9
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.9e-09 64.7 53 47.2
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 5.0e-09 63.9 55 54.5
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 6.5e-09 63.5 53 52.8
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 6.5e-09 63.5 52 50.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.1e-08 62.8 53 49.1
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 1.1e-08 62.8 58 50.0
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.4e-08 62.4 52 55.8
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.4e-08 62.4 53 49.1
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.9e-08 62.0 55 49.1
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.9e-08 62.0 45 60.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.5e-08 61.6 55 47.3
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 45.3
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 9.4e-08 59.7 53 43.4
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 9.4e-08 59.7 53 43.4
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 9.4e-08 59.7 53 43.4
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 9.4e-08 59.7 54 48.1
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 47.2
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 45.3
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 6.1e-07 57.0 50 52.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.0e-06 56.2 58 44.8
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.0e-06 56.2 42 57.1
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.4e-06 55.8 44 63.6
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 43.4


User provided reference genes

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