Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016637 Carpinus fangiana HOM05D007235 ORTHO05D008985 0.0e+00 2337.4 1136 100.0
Haze_19642 Corylus avellana HOM05D007235 ORTHO05D008985 0.0e+00 1973.7 1110 88.2
CiPaw.10G011900 Carya illinoinensis HOM05D007235 ORTHO05D008985 0.0e+00 1824.3 1181 77.1
Prupe.7G102400 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1649.8 1183 70.0
Dinv31713 Davidia involucrata HOM05D007235 ORTHO05D008985 0.0e+00 1648.6 1193 69.4
Dinv31712 Davidia involucrata HOM05D007235 ORTHO05D008985 0.0e+00 1647.5 1184 69.5
QL07p038338 Quercus lobata HOM05D007235 ORTHO05D008985 0.0e+00 1622.4 1084 73.9
Atru.chr8.1458 Acer truncatum HOM05D007235 ORTHO05D008985 0.0e+00 1620.1 1136 71.5
FvH4_6g19350 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1612.4 1188 67.6
FAN02G2734 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1609.0 1188 67.7
FAN14G5756 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1608.2 1188 67.4
Manes.09G053100 Manihot esculenta HOM05D007235 ORTHO05D008985 0.0e+00 1607.4 1173 67.7
MD12G1029200 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1597.4 1172 68.2
Potri.006G210325 Populus trichocarpa HOM05D007235 ORTHO05D008985 0.0e+00 1577.8 1180 66.7
FvH4_6g19352 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1559.7 1182 66.6
Potri.006G210150 Populus trichocarpa HOM05D007235 ORTHO05D008985 0.0e+00 1553.9 1171 66.0
FAN14G3457 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1540.0 1209 64.8
TWI74G0874 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 0.0e+00 1539.6 1178 65.9
CSS0040083 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1533.9 1175 66.6
TWI74G1128 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 0.0e+00 1527.3 1178 65.6
Actinidia05406 Actinidia chinensis HOM05D007235 ORTHO05D008985 0.0e+00 1515.7 1169 65.2
Rhsim03G0070500 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1511.5 1180 64.7
CSS0012377 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1507.3 1168 65.7
Duzib093G1209 Durio zibethinus HOM05D007235 ORTHO05D008985 0.0e+00 1505.0 1168 64.9
CSS0010120 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1502.6 1168 65.6
Sabra06G0161900 Salix brachista HOM05D007235 ORTHO05D008985 0.0e+00 1496.9 1154 65.5
ClCG04G010150 Citrullus lanatus HOM05D007235 ORTHO05D008985 0.0e+00 1475.3 1169 63.9
Prupe.8G215200 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1474.9 1197 63.9
CsaV3_6G040770 Cucumis sativus L. HOM05D007235 ORTHO05D008985 0.0e+00 1473.8 1164 62.9
Lj2C141T11 Lonicera japonica HOM05D007235 ORTHO05D008985 0.0e+00 1471.1 1134 64.0
Rhsim03G0072800 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1464.5 1164 63.8
MELO3C024556.2 Cucumis melo HOM05D007235 ORTHO05D008985 0.0e+00 1434.5 1281 57.8
MD10G1176100 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1421.4 1199 62.1
Aqoxy2G01105 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 0.0e+00 1419.4 1197 60.7
Lsat_1_v5_gn_9_21080 Lactuca sativa HOM05D007235 ORTHO05D008985 0.0e+00 1414.1 1172 60.7
FAN02G0370 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1408.3 1116 65.1
PSO339G1765 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 1404.8 1131 62.2
Aqoxy2G01076 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 0.0e+00 1404.0 1196 60.6
SalBow3G3787 Salvia bowleyana HOM05D007235 ORTHO05D008985 0.0e+00 1395.2 1169 60.1
Rhsim03G0070400 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1350.5 1089 63.2
PSO801G0535 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 1344.7 1109 61.8
DCAR_013408 Daucus carota HOM05D007235 ORTHO05D008985 0.0e+00 1320.4 1147 58.5
TAR623G1371 Trochodendron aralioides HOM05D007235 ORTHO05D008985 0.0e+00 1313.5 1005 66.4
SalBow3G1230 Salvia bowleyana HOM05D007235 ORTHO05D008985 0.0e+00 1313.1 1169 57.4
DCAR_007760 Daucus carota HOM05D007235 ORTHO05D008985 0.0e+00 1296.6 1166 57.1
Duzib106G1334 Durio zibethinus HOM05D007235 ORTHO05D008985 0.0e+00 1278.5 1005 63.8
MBI17_g35889_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 0.0e+00 1264.6 1205 55.4
HPP92_006812 Vanilla planifolia HOM05D007235 ORTHO05D008985 0.0e+00 1243.0 1175 54.2
Cc06_g21800 Coffea canephora HOM05D007235 ORTHO05D008985 0.0e+00 1215.7 1109 57.3
Ciclev10011029m.g Citrus clementina HOM05D007235 ORTHO05D008985 0.0e+00 1203.7 912 66.4
Sed0026179 Sechium edule HOM05D007235 ORTHO05D008985 0.0e+00 1192.9 886 66.5
Atru.chr8.1456 Acer truncatum HOM05D007235 ORTHO05D008985 0.0e+00 1190.6 885 68.4
GSVIVG01033880001 Vitis vinifera HOM05D007235 ORTHO05D008985 0.0e+00 1189.9 839 69.5
Gorai.002G238500 Gossypium raimondii HOM05D007235 ORTHO05D008985 0.0e+00 1187.9 874 67.2
Gohir.A01G204950 Gossypium hirsutum HOM05D007235 ORTHO05D008985 0.0e+00 1145.2 874 65.2
PSO801G0111 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 1145.2 1005 58.8
Gohir.D01G194350 Gossypium hirsutum HOM05D007235 ORTHO05D008985 0.0e+00 1127.1 914 62.1
Migut.J01009 Erythranthe guttata HOM05D007235 ORTHO05D008985 0.0e+00 1108.6 1041 54.8
RcHm_v2.0_Chr3g0474611 Rosa chinensis HOM05D007235 ORTHO05D008985 0.0e+00 1087.4 774 70.0
Lj7C625T8 Lonicera japonica HOM05D007235 ORTHO05D008985 5.0e-309 1064.7 870 61.1
ATR0820G239 Amborella trichopoda HOM05D007235 ORTHO05D008985 2.5e-308 1062.4 865 59.4
RcHm_v2.0_Chr3g0474651 Rosa chinensis HOM05D007235 ORTHO05D008985 4.7e-307 1058.1 774 68.5
SEGI_22450 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 4.5e-302 1041.6 1174 48.1
SEGI_15434 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 4.0e-282 975.3 981 52.5
Cc06_g21890 Coffea canephora HOM05D007235 ORTHO05D008985 9.8e-273 944.1 755 62.1
Migut.J01008 Erythranthe guttata HOM05D007235 ORTHO05D008985 1.0e-269 934.1 824 58.1
Haze_19644 Corylus avellana HOM05D007235 ORTHO05D008985 1.1e-250 870.9 623 73.2
AagrBONN_evm.TU.Sc2ySwM_228.2009 Anthoceros agrestis HOM05D007235 ORTHO05D008985 6.9e-242 841.6 1157 40.9
MBI17_g41037_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 1.4e-234 817.4 684 62.3
Hma1.2p1_0769F.1_g215770 Hydrangea macrophylla HOM05D007235 ORTHO05D008985 3.0e-229 799.7 682 60.3
Haze_19643 Corylus avellana HOM05D007235 ORTHO05D008985 1.5e-228 797.3 524 77.7
Mapoly0090s0057 Marchantia polymorpha HOM05D007235 ORTHO05D008985 1.7e-224 783.9 1219 38.1
COL.COLO4_29683 Corchorus olitorius HOM05D007235 ORTHO05D008985 5.8e-217 758.8 656 59.9
TAR623G0688 Trochodendron aralioides HOM05D007235 ORTHO05D008985 7.9e-198 695.3 479 71.0
Aqoxy2G01078 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 8.6e-168 595.5 466 63.9
Aqoxy2G01077 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 2.2e-163 580.9 443 65.5
QL07p038322 Quercus lobata HOM05D007235 ORTHO05D008985 1.4e-157 561.6 350 77.7
MBI17_g48245_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 4.9e-139 500.0 534 51.1
PSO339G2372 Papaver somniferum HOM05D007235 ORTHO05D008985 4.0e-125 453.8 411 55.7
Cfa021070 Carpinus fangiana HOM05D007235 ORTHO05D008985 5.8e-116 423.3 205 98.5
Lj7A625G73 Lonicera japonica HOM05D007235 ORTHO05D008985 4.9e-115 420.2 285 72.6
Atru.chr8.1457 Acer truncatum HOM05D007235 ORTHO05D008985 4.8e-110 403.7 276 72.8
MBI17_g48244_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 1.5e-108 398.7 352 58.2
Cfa016638 Carpinus fangiana HOM05D007235 ORTHO05D008985 5.5e-106 390.2 330 66.4
COL.COLO4_29681 Corchorus olitorius HOM05D007235 ORTHO05D008985 2.1e-102 378.3 312 60.3
QL07p038324 Quercus lobata HOM05D007235 ORTHO05D008985 1.3e-99 369.0 228 77.6
GSVIVG01033881001 Vitis vinifera HOM05D007235 ORTHO05D008985 3.2e-90 337.8 218 73.9
Ciclev10013621m.g Citrus clementina HOM05D007235 ORTHO05D008985 9.7e-87 326.2 218 72.9
COL.COLO4_29682 Corchorus olitorius HOM05D007235 ORTHO05D008985 2.2e-86 325.1 214 72.4
MBI17_g41038_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 9.1e-85 319.7 343 50.1
RcHm_v2.0_Chr3g0474671 Rosa chinensis HOM05D007235 ORTHO05D008985 3.4e-84 317.8 218 69.7
Gorai.002G238400 Gossypium raimondii HOM05D007235 ORTHO05D008985 2.1e-81 308.5 200 70.0
RcHm_v2.0_Chr3g0474591 Rosa chinensis HOM05D007235 ORTHO05D008985 7.9e-81 306.6 232 66.8
Gohir.A01G204900 Gossypium hirsutum HOM05D007235 ORTHO05D008985 2.8e-78 298.1 200 69.0
Migut.J01007 Erythranthe guttata HOM05D007235 ORTHO05D008985 3.9e-72 277.7 205 62.0
SEGI_13044 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 7.7e-60 236.9 230 52.6
COL.COLO4_29684 Corchorus olitorius HOM05D002712 ORTHO05D007713 1.7e-54 219.2 138 76.1
Cfa009503 Carpinus fangiana HOM05D007235 ORTHO05D008985 4.7e-41 174.5 1085 23.8
DCAR_007761 Daucus carota HOM05D007235 ORTHO05D008985 9.2e-37 160.2 109 70.6
QL07p038319 Quercus lobata HOM05D007235 ORTHO05D008985 1.2e-31 143.3 89 79.8
QL07p038331 Quercus lobata HOM05D007235 ORTHO05D008985 9.8e-31 140.2 92 77.2
Thecc.05G094000 Theobroma cacao HOM05D007235 ORTHO05D008985 2.9e-30 138.7 218 41.7
ATR0820G010 Amborella trichopoda HOM05D007235 ORTHO05D008985 2.7e-28 132.1 123 53.7
Actinidia37302 Actinidia chinensis HOM05D007235 ORTHO05D008985 6.8e-24 117.5 74 73.0
RcHm_v2.0_Chr3g0474631 Rosa chinensis HOM05D007235 ORTHO05D008985 3.4e-23 115.2 71 80.3
Dinv03307 Davidia involucrata HOM05D007235 ORTHO05D008985 1.9e-18 99.4 62 71.0
MD14G1029500 Malus domestica HOM05D007235 ORTHO05D008985 3.3e-18 98.6 61 77.0
Dinv28424 Davidia involucrata HOM05D007235 ORTHO05D008985 7.3e-18 97.4 55 74.5
Ciclev10013607m.g Citrus clementina HOM05D007235 ORTHO05D008985 2.0e-15 89.4 68 63.2
Pp3c14_16140 Physcomitrium patens HOM05D001324 ORTHO05D001220 2.7e-12 79.0 545 22.9
Cc08_g06040 Coffea canephora HOM05D001324 ORTHO05D001220 1.5e-10 73.2 588 22.3
Cpa.g.sc2124.1 Carica papaya HOM05D001324 ORTHO05D001220 6.2e-09 67.8 524 23.9
Eucgr.D02568 Eucalyptus grandis HOM05D001324 ORTHO05D001220 9.0e-08 63.9 499 22.2
Aqoxy2G03477 Aquilegia oxysepala HOM05D001324 ORTHO05D001220 2.0e-07 62.8 548 22.4
Peaxi162Scf00045g01026 Petunia axillaris HOM05D001324 ORTHO05D001220 5.8e-07 61.2 490 22.2
VMungo1127G0502 Vigna mungo HOM05D001324 ORTHO05D001220 5.8e-07 61.2 556 22.1
Actinidia18171 Actinidia chinensis HOM05D001324 ORTHO05D001220 3.8e-06 58.5 205 26.8
BolC7t41895H Brassica oleracea HOM05D001324 ORTHO05D001220 3.8e-06 58.5 562 22.6
CANSAT78G1809 Cannabis sativa HOM05D001324 ORTHO05D001220 3.8e-06 58.5 205 27.3
SalBow8G0470 Salvia bowleyana HOM05D001324 ORTHO05D001220 3.8e-06 58.5 207 27.5


User provided reference genes

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