Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.4e-63 246.1 125 100.0
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 8.5e-61 236.9 125 94.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.8e-42 173.7 128 71.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 5.9e-38 161.0 127 64.6
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 3.3e-36 155.2 118 70.3
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 4.2e-36 154.8 127 63.8
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.2e-35 153.3 125 66.4
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.2e-35 153.3 128 67.2
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.8e-35 152.1 134 61.9
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.8e-35 152.1 123 68.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 6.1e-35 151.0 123 66.7
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.4e-34 149.8 124 67.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.0e-34 148.7 129 63.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.8e-34 147.5 124 66.9
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.9e-34 147.1 124 66.9
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.2e-33 146.7 119 62.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.4e-33 145.2 128 63.3
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.4e-33 144.8 125 61.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 4.4e-33 144.8 127 64.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.4e-33 144.8 125 64.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.4e-33 144.8 126 62.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 5.7e-33 144.4 125 64.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.8e-32 142.1 128 62.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.7e-32 141.7 119 62.2
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.7e-32 141.7 128 62.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.1e-31 140.2 124 62.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.8e-31 139.4 120 62.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-30 136.7 126 60.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-30 136.7 130 63.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.6e-30 136.3 121 59.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 2.0e-30 136.0 128 63.3
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.5e-30 135.2 116 61.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.5e-30 134.8 125 57.6
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 5.9e-30 134.4 125 62.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.8e-30 134.0 119 58.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.8e-30 134.0 124 58.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.0e-29 133.7 129 57.4
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.3e-29 132.5 132 62.1
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.8e-29 131.7 124 59.7
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 5.0e-29 131.3 133 59.4
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.6e-29 130.6 118 64.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.5e-28 129.0 126 58.7
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.5e-28 129.0 126 58.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-28 128.6 126 58.7
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.3e-28 128.6 127 59.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.3e-28 128.3 126 58.7
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-28 128.3 127 58.3
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.3e-28 127.5 118 63.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 7.3e-28 127.5 128 58.6
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.5e-28 127.1 128 57.8
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 9.5e-28 127.1 123 57.7
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.2e-27 126.7 120 55.8
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.6e-27 126.3 124 56.5
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.6e-27 125.2 119 55.5
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.3e-26 122.5 131 54.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.8e-26 120.9 120 60.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 8.9e-26 120.6 112 53.6
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-25 120.2 139 53.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.0e-25 119.4 136 55.9
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.4e-25 118.6 131 51.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 5.8e-25 117.9 126 51.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.5e-25 117.5 127 53.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 9.8e-25 117.1 137 54.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.9e-24 115.5 132 53.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 8.3e-24 114.0 135 49.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.1e-23 113.6 110 58.2
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.4e-23 113.2 134 50.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.4e-23 112.5 124 56.5
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.1e-23 111.7 122 54.1
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.4e-23 111.3 112 53.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 5.4e-23 111.3 125 52.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.4e-23 111.3 129 58.1
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 9.2e-23 110.5 143 51.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 9.2e-23 110.5 121 49.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.7e-22 109.0 113 55.8
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.7e-21 106.3 126 54.8
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-21 106.3 114 52.6
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-21 106.3 114 52.6
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.7e-21 106.3 120 51.7
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.0e-21 105.5 110 52.7
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-21 105.5 123 47.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.0e-21 105.5 93 61.3
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.9e-21 105.1 117 49.6
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.6e-21 104.4 103 59.2
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 8.6e-21 104.0 113 54.9
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.1e-20 103.6 116 53.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-20 103.6 112 52.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-20 103.6 114 54.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-20 103.6 124 48.4
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 113 51.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-20 103.2 123 48.8
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-20 103.2 120 50.0
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 114 57.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 7.3e-20 100.9 125 52.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 9.5e-20 100.5 128 51.6
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.2e-19 100.1 127 53.5
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-19 100.1 103 58.3
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-19 100.1 141 46.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-19 99.8 123 44.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.1e-19 99.4 123 46.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.8e-19 99.0 126 53.2
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.8e-19 99.0 126 53.2
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.8e-19 99.0 117 47.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 124 46.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 124 46.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 128 48.4
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.8e-19 99.0 127 52.8
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 6.2e-19 97.8 134 45.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 8.0e-19 97.4 135 47.4
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 8.0e-19 97.4 117 47.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.1e-18 97.1 124 48.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.1e-18 95.5 112 51.8
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 4.0e-18 95.1 148 46.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 5.2e-18 94.7 160 43.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 5.2e-18 94.7 126 50.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.8e-18 94.4 115 47.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.9e-18 94.0 112 50.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 8.9e-18 94.0 113 45.1
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 52.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.2e-17 93.6 124 44.4
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-17 93.2 125 52.0
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.0e-17 92.8 126 42.9
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-17 92.4 116 45.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 3.4e-17 92.0 97 51.5
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 5.8e-17 91.3 137 43.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 7.5e-17 90.9 118 50.0
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 9.8e-17 90.5 116 51.7
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.8e-17 90.5 125 42.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.3e-16 90.1 127 43.3
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.2e-16 89.4 123 44.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.2e-16 89.4 123 43.9
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.9e-16 89.0 125 50.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.9e-16 89.0 125 50.4
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.7e-16 88.6 164 40.2
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 3.7e-16 88.6 116 44.0
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 6.4e-16 87.8 117 47.0
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-15 86.7 120 45.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 129 43.4
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 3.2e-15 85.5 117 42.7
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 4.1e-15 85.1 113 50.4
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-14 83.2 85 50.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 130 42.3
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.6e-14 81.6 120 45.8
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 4.6e-14 81.6 136 41.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.3e-13 79.3 122 44.3
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.6e-13 77.4 106 43.4
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.5e-12 73.9 122 40.2
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.8e-11 72.4 75 57.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.8e-11 72.4 75 57.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.6e-11 72.0 165 32.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.2e-11 71.2 98 46.9
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-10 70.5 145 35.9
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 4.0e-10 68.6 164 31.7
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 5.2e-10 68.2 110 39.1
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.5e-09 66.6 112 37.5
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.5e-09 66.6 124 40.3
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.5e-09 66.6 127 38.6
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 9.9e-09 63.9 115 35.7
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.3e-08 63.5 115 39.1
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.7e-08 63.2 119 35.3
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 2.2e-08 62.8 115 35.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.2e-08 62.8 77 41.6
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.7e-08 62.0 94 45.7
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 6.4e-08 61.2 124 33.9
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 8.3e-08 60.8 130 33.8
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.6e-06 56.6 107 36.4
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 2.1e-06 56.2 143 31.5
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 7.8e-06 54.3 37 67.6


User provided reference genes

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